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  • Nov 01 2020 20:55
    emi80 removed as member
  • Sep 28 2017 15:05

    pditommaso on master

    Updated slides links (compare)

  • Sep 28 2017 14:57

    pditommaso on master

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  • Sep 22 2017 13:24

    pditommaso on master

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  • Sep 17 2017 21:58

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  • Sep 17 2017 21:57

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  • Sep 17 2017 20:34
    pditommaso commented #9
  • Sep 17 2017 20:04

    pditommaso on master

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  • Sep 17 2017 19:59
    pditommaso closed #14
  • Sep 17 2017 19:59
    pditommaso commented #14
  • Sep 15 2017 17:45
    ewels commented #4
  • Sep 15 2017 15:36
    skptic commented #7
  • Sep 15 2017 15:32
    ewels commented #4
  • Sep 15 2017 14:11
    tdudgeon commented #11
  • Sep 15 2017 13:23
    tdudgeon commented #9
  • Sep 15 2017 13:14
    ewels commented #3
  • Sep 15 2017 13:02
    ewels commented #4
  • Sep 15 2017 13:00
    ewels commented #4
  • Sep 15 2017 13:00
    tdudgeon commented #9
  • Sep 15 2017 12:59
    Hammarn commented #4
Hugues Fontenelle
@huguesfontenelle
I guess that my URL was longer than UNIX_PATH_MAX which should be 104.
I wonder why noone else got the issue
Andreas Wilm
@andreas-wilm
Hey, what's the best way to report typos in the documentation?
Hugues Fontenelle
@huguesfontenelle
pull-requests? :-)
Andreas Wilm
@andreas-wilm
Is the doc part of the main repo?
Paolo Di Tommaso
@pditommaso
yes
here
Andreas Wilm
@andreas-wilm
Okay
Phil Ewels
@ewels
Hi all - anyone interested in the HTML work - we're sat on the terrace on floor 3
Hugues Fontenelle
@huguesfontenelle
HTML? what you do?
Luca Cozzuto
@lucacozzuto
we just moved to Json :)
Hugues Fontenelle
@huguesfontenelle
the "terrace" part sounded interesting
Paolo Di Tommaso
@pditommaso
nap on open air ? :)
Phil Ewels
@ewels
:zzz:
Luca Cozzuto
@lucacozzuto
Nope. Hardworking
in front of the sea
Luca Cozzuto
@lucacozzuto
Hi Paolo, do you need to run "nextflow log" instead of "nextflow run"?
or after?
Paolo Di Tommaso
@pditommaso
no,no, like log
not in place of run
Luca Cozzuto
@lucacozzuto
ok so you are thinking about a template to convert the information in json, isn't it?
Paolo Di Tommaso
@pditommaso
yes, image you have a file like
{
  "process": "${task.process}",
  "cpus": "${task.cpus}", 
   etc
}
or
<html>
<body>
<table> 
<tr> <td>process </td> <td>${task.process} </td> </tr>
... blah blah
</table>
</body>
</html>
Luca Cozzuto
@lucacozzuto
ok so you already have support for json? How we can make it?
Phil Ewels
@ewels
The downside is that people have to run a second command after the pipeline finishes, which is not so ideal
Luca Cozzuto
@lucacozzuto
PS: no html please! :)
Phil Ewels
@ewels
HTML! HTML! :tada:
Paolo Di Tommaso
@pditommaso
you see, this is why we need a custom report .. :)
Luca Cozzuto
@lucacozzuto
:)
I agree with NOT re-running nextflow (if possible)
Paolo Di Tommaso
@pditommaso
@ewels no, I'm not suggesting to use a separate command to do that
Paolo Di Tommaso
@pditommaso
the run should be able to do that
Phil Ewels
@ewels
@pditommaso ok then I'm confused :)
Matthieu Foll
@mfoll
how?
Phil Ewels
@ewels
@pditommaso "no,no, like log not in place of run "
Paolo Di Tommaso
@pditommaso
look here
and here
Hugues Fontenelle
@huguesfontenelle
still on terrace 3rd floor?
Matthieu Foll
@mfoll
yes
Hugues Fontenelle
@huguesfontenelle
joining soon
Paolo Di Tommaso
@pditommaso
I think they are serving the coffee in front the conf room
Andreas Wilm
@andreas-wilm
RE typos: Pull request sent
Emilio Palumbo
@emi80
question from the tutorial:
why -resume is not the default??