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  • Nov 01 2020 20:55
    emi80 removed as member
  • Sep 28 2017 15:05

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  • Sep 17 2017 20:34
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  • Sep 17 2017 19:59
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  • Sep 17 2017 19:59
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  • Sep 15 2017 17:45
    ewels commented #4
  • Sep 15 2017 15:36
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  • Sep 15 2017 13:00
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  • Sep 15 2017 12:59
    Hammarn commented #4
Hugues Fontenelle
@huguesfontenelle
the "terrace" part sounded interesting
Paolo Di Tommaso
@pditommaso
nap on open air ? :)
Phil Ewels
@ewels
:zzz:
Luca Cozzuto
@lucacozzuto
Nope. Hardworking
in front of the sea
Luca Cozzuto
@lucacozzuto
Hi Paolo, do you need to run "nextflow log" instead of "nextflow run"?
or after?
Paolo Di Tommaso
@pditommaso
no,no, like log
not in place of run
Luca Cozzuto
@lucacozzuto
ok so you are thinking about a template to convert the information in json, isn't it?
Paolo Di Tommaso
@pditommaso
yes, image you have a file like
{
  "process": "${task.process}",
  "cpus": "${task.cpus}", 
   etc
}
or
<html>
<body>
<table> 
<tr> <td>process </td> <td>${task.process} </td> </tr>
... blah blah
</table>
</body>
</html>
Luca Cozzuto
@lucacozzuto
ok so you already have support for json? How we can make it?
Phil Ewels
@ewels
The downside is that people have to run a second command after the pipeline finishes, which is not so ideal
Luca Cozzuto
@lucacozzuto
PS: no html please! :)
Phil Ewels
@ewels
HTML! HTML! :tada:
Paolo Di Tommaso
@pditommaso
you see, this is why we need a custom report .. :)
Luca Cozzuto
@lucacozzuto
:)
I agree with NOT re-running nextflow (if possible)
Paolo Di Tommaso
@pditommaso
@ewels no, I'm not suggesting to use a separate command to do that
Paolo Di Tommaso
@pditommaso
the run should be able to do that
Phil Ewels
@ewels
@pditommaso ok then I'm confused :)
Matthieu Foll
@mfoll
how?
Phil Ewels
@ewels
@pditommaso "no,no, like log not in place of run "
Paolo Di Tommaso
@pditommaso
look here
and here
Hugues Fontenelle
@huguesfontenelle
still on terrace 3rd floor?
Matthieu Foll
@mfoll
yes
Hugues Fontenelle
@huguesfontenelle
joining soon
Paolo Di Tommaso
@pditommaso
I think they are serving the coffee in front the conf room
Andreas Wilm
@andreas-wilm
RE typos: Pull request sent
Emilio Palumbo
@emi80
question from the tutorial:
why -resume is not the default??
:D
Andreas Wilm
@andreas-wilm
Yes. Why not implement -force instead
Luca Cozzuto
@lucacozzuto
agree
Andreas Wilm
@andreas-wilm
Sorry, I heard this might start a flame war
Hugues Fontenelle
@huguesfontenelle
I'd say spaces, not tabs.
Phil Ewels
@ewels
vim, not emacs? :trollface:
Rickard Hammarén
@Hammarn
why not both?
Hugues Fontenelle
@huguesfontenelle
btw, where are the working groups? 3rd floor terrace has moved away, right?
Luca Cozzuto
@lucacozzuto
too cold we went back to the room
Phil Ewels
@ewels
oh sorry, yeah it got cold and rainy so we moved back to the 4th floor room
Hugues Fontenelle
@huguesfontenelle
:)
room number?
Rickard Hammarén
@Hammarn
4th floor and to the left