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  • Nov 01 2020 20:55
    emi80 removed as member
  • Sep 28 2017 15:05

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  • Sep 17 2017 20:34
    pditommaso commented #9
  • Sep 17 2017 20:04

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  • Sep 17 2017 19:59
    pditommaso closed #14
  • Sep 17 2017 19:59
    pditommaso commented #14
  • Sep 15 2017 17:45
    ewels commented #4
  • Sep 15 2017 15:36
    skptic commented #7
  • Sep 15 2017 15:32
    ewels commented #4
  • Sep 15 2017 14:11
    tdudgeon commented #11
  • Sep 15 2017 13:23
    tdudgeon commented #9
  • Sep 15 2017 13:14
    ewels commented #3
  • Sep 15 2017 13:02
    ewels commented #4
  • Sep 15 2017 13:00
    ewels commented #4
  • Sep 15 2017 13:00
    tdudgeon commented #9
  • Sep 15 2017 12:59
    Hammarn commented #4
Phil Ewels
@ewels
The downside is that people have to run a second command after the pipeline finishes, which is not so ideal
Luca Cozzuto
@lucacozzuto
PS: no html please! :)
Phil Ewels
@ewels
HTML! HTML! :tada:
Paolo Di Tommaso
@pditommaso
you see, this is why we need a custom report .. :)
Luca Cozzuto
@lucacozzuto
:)
I agree with NOT re-running nextflow (if possible)
Paolo Di Tommaso
@pditommaso
@ewels no, I'm not suggesting to use a separate command to do that
Paolo Di Tommaso
@pditommaso
the run should be able to do that
Phil Ewels
@ewels
@pditommaso ok then I'm confused :)
Matthieu Foll
@mfoll
how?
Phil Ewels
@ewels
@pditommaso "no,no, like log not in place of run "
Paolo Di Tommaso
@pditommaso
look here
and here
Hugues Fontenelle
@huguesfontenelle
still on terrace 3rd floor?
Matthieu Foll
@mfoll
yes
Hugues Fontenelle
@huguesfontenelle
joining soon
Paolo Di Tommaso
@pditommaso
I think they are serving the coffee in front the conf room
Andreas Wilm
@andreas-wilm
RE typos: Pull request sent
Emilio Palumbo
@emi80
question from the tutorial:
why -resume is not the default??
:D
Andreas Wilm
@andreas-wilm
Yes. Why not implement -force instead
Luca Cozzuto
@lucacozzuto
agree
Andreas Wilm
@andreas-wilm
Sorry, I heard this might start a flame war
Hugues Fontenelle
@huguesfontenelle
I'd say spaces, not tabs.
Phil Ewels
@ewels
vim, not emacs? :trollface:
Rickard Hammarén
@Hammarn
why not both?
Hugues Fontenelle
@huguesfontenelle
btw, where are the working groups? 3rd floor terrace has moved away, right?
Luca Cozzuto
@lucacozzuto
too cold we went back to the room
Phil Ewels
@ewels
oh sorry, yeah it got cold and rainy so we moved back to the 4th floor room
Hugues Fontenelle
@huguesfontenelle
:)
room number?
Rickard Hammarén
@Hammarn
4th floor and to the left
Luca Cozzuto
@lucacozzuto
bioinformatics room (468)
Hugues Fontenelle
@huguesfontenelle
+1
Luca Cozzuto
@lucacozzuto
Hi Paolo, do you have an example of template for the nextflow log command?
Rickard Hammarén
@Hammarn
Bumping the link to the hackmd if anyone is interested; here
David Mas-Ponte
@davidmasp
:+1:
Jose Espinosa-Carrasco
@JoseEspinosa
👌
Phil Ewels
@ewels
For anyone who likes stickers - I just left some MultiQC stickers on the desk near the door
Help yourself!
(Also CAW - our cancer analysis pipeline)
Oskar Lindsjö
@Ackia
Thanks Phil!
Phil Ewels
@ewels
wow, all the stickers went already..! I added some more for anyone who missed out.
Andreas Wilm
@andreas-wilm
Hey, so the videos of the talks will be uploaded, right? Were there any plans to share the slides as well (only of those presenters who are comfortable with it of course)?
Luca Cozzuto
@lucacozzuto
btw what about the pendrive with the presentation? :)