These are chat archives for nextflow-io/nextflow

20th
May 2015
Michael L Heuer
@heuermh
May 20 2015 16:02
I'm curious how exactly nextflow handles sharing via git. We might want to be able to pull from a private github repo (which requires auth over https) or a non-github git repo (git over ssh with key pair setup).
Paolo Di Tommaso
@pditommaso
May 20 2015 16:03
for now it are only supported Github and BitBucket over http
I guess it's pretty feasible to add git over ssh with key pair setup
since nextflow is using JGit implementation that has support for it
Paolo Di Tommaso
@pditommaso
May 20 2015 16:18
auth over https is managed by providing user/password credentials
Michael L Heuer
@heuermh
May 20 2015 16:29
so private github repo might work, I just need to configure nextflow with username/pw?
Paolo Di Tommaso
@pditommaso
May 20 2015 17:50
yes, you need to specify the user with the -user command line option and it will ask the pwd
Michael L Heuer
@heuermh
May 20 2015 18:19
cool, that works
Paolo Di Tommaso
@pditommaso
May 20 2015 18:35
:+1:
Erik Pearson
@epearson-nmdp
May 20 2015 21:57
Is there an option to pass credentials to log in with docker to run images from private docker repos?
Paolo Di Tommaso
@pditommaso
May 20 2015 21:58
um, unfortunately no
Erik Pearson
@epearson-nmdp
May 20 2015 22:00
Okay. Perhaps we'll have to run a private registry instead. It would be a great feature to have!
Paolo Di Tommaso
@pditommaso
May 20 2015 22:01
yes it may be useful, I think I tried to implement that but I think I have encountered a problem that I do not remember well now.
However you may want open a feature request on Github for it
Erik Pearson
@epearson-nmdp
May 20 2015 22:05
Will do, thanks.