These are chat archives for nextflow-io/nextflow

19th
Aug 2015
Paolo Di Tommaso
@pditommaso
Aug 19 2015 08:06
Hi @mfoll, I've uploaded a snapshot including a patch for #66
You may want to give it a try
In order to use it declare the following var in your env
NXF_VER=0.15.2-SNAPSHOT
and launch nextflow as usual
Matthieu Foll
@mfoll
Aug 19 2015 08:07
Hi, great, I’ll try it right now
Matthieu Foll
@mfoll
Aug 19 2015 08:13
Good, it’s working
but I had to first delete manually the pipeline previously downloaded in .nextflow/assets/
Paolo Di Tommaso
@pditommaso
Aug 19 2015 08:17
Good.
I think you needed to delete it because it was in an inconsistent state.
Just as a tip, I would suggest to add a small test dataset in your pipeline repository
that would allow you to test it in CI service like http://circleci.com
Matthieu Foll
@mfoll
Aug 19 2015 08:21
Yes, I’m thinking about that but I don’t have data I can share publically at the moment (human subjects with data sharing restrictions)
But I’ll try to find some, and indeed circleci is something I want to try!
Paolo Di Tommaso
@pditommaso
Aug 19 2015 08:23
I guess that, but it can be enough only fake data, just to have things running