These are chat archives for nextflow-io/nextflow

Dec 2015
Dec 30 2015 06:25
Another problem is we want to set the work folder to another one instead of the default, and set the environment of $NXF_WORK, $NXF_TEMP in nextflow.config based on the page But nextflow still create "work" in the present directory, seems the config doesn't take effect. Is it correct to set this two variables? thank you.
Paolo Di Tommaso
Dec 30 2015 10:06
@wuyilei $NXF_WORK and $NXF_TEMP cannot be defined in the nextflow config file. They must be defined in the environment before launching nextflow
@wuyilei env variables defined in the nextflow.config are meant for tools/commands executed by your pipeline