These are chat archives for nextflow-io/nextflow

14th
Feb 2016
Evan Floden
@evanfloden
Feb 14 2016 00:01
Somehow when docker is executed, another '-v $DIR:$DIR' should be able to be specified.
Paolo Di Tommaso
@pditommaso
Feb 14 2016 08:14
This message was deleted
@skptic If you need that it's because you need to access some data
thus you need to declare it as an input: in your process
Evan Floden
@evanfloden
Feb 14 2016 08:15
Yes exactly. The work directory is in /Users and data in /Volumes
Paolo Di Tommaso
@pditommaso
Feb 14 2016 08:15
by doing that nextflow will mount that volume automatically
Evan Floden
@evanfloden
Feb 14 2016 08:18
Hmmm… The file I’m trying to run is set an input however I don’t see Nextflow mounting the drive. I will look again later today and get back to you with how to reproduce it. Thanks for your help anyway, I learnt a whole lotabout Docker last night ;)
Paolo Di Tommaso
@pditommaso
Feb 14 2016 08:18
ok