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bash -x .command.runthe script runs just fine on the worker node. Looks like I'm going to be scratching my head a bit on this one. Thanks for the suggestion.
/usr/bin/env Rby any chance?
yeah, exactly! This can invoke different versions of R/Rscript between say a login node and a working node. In my case, we recently upgraded our worker nodes to el7. You may need to use something like:
module load R/3.0.1-goolf-1.4.10-no-OFED-bare
I don’t know anything about
module to be honest but Paolo suggested it. I would guess you are calling a different R installation on the worker node.
/<your local R>/bin/Rscript
moduleis a tool that makes manipulating your environment convenient. I will try that again.