These are chat archives for nextflow-io/nextflow
Hi Paolo @pditommaso, I'm getting the following output on after submitting a job to SGE (created with cfncluster)
/var/spool/sge/ip-172-19-0-217/job_scripts/10: line 25: syntax error near unexpected token `<'
I see this output in the
.command.log file and I'm assuming it's generated by the qsub of
.command.run. It looks like the worker node is using bash version 4.2. Have you seen anything like this?
/bin/shI'll see what I can do to force that to become bash.