These are chat archives for nextflow-io/nextflow

30th
Jan 2017
Paolo Di Tommaso
@pditommaso
Jan 30 2017 09:57
@amacbride I've uploaded a new snapshot that should fix the problem. You can give it a try by defining the var NXF_VER=0.23.2-SNAPSHOT. Let me know if this solve your problem.
amacbride
@amacbride
Jan 30 2017 20:38
@pditommaso Hi Paolo, thank you, I will give it a try. I'm using the trace module (and a docker-based pipeline), but I see that there are variables that I'm not capturing yet (like the container id) that would be helpful.
Paolo Di Tommaso
@pditommaso
Jan 30 2017 20:39
I have the feeling the nxf_kill issue is causing the problem you are reporting.
amacbride
@amacbride
Jan 30 2017 20:40
In terms of the race condition, I'd like to gather some more data. I know that this configuration works fine with NFS and SLURM on a single node, but I only see the problem when I add additional nodes (and it's intermittent.)