These are chat archives for nextflow-io/nextflow

10th
Feb 2017
amacbride
@amacbride
Feb 10 2017 01:09 UTC
@pditommaso Just wanted to say that it's been pretty painless so far to try switching from Docker to Singularity -- having NF take care of the details is awesome. Also, using NFS4 with noac seems to have helped with the race condition, so I'm continuing to keep my fingers crossed....
Paolo Di Tommaso
@pditommaso
Feb 10 2017 08:09 UTC
happy to hear that!
Fredrik Boulund
@boulund
Feb 10 2017 14:56 UTC
Hi guys! Back again with more questions. I have a process that produces an awful lot of output files, and I want to store all of them. But I only want some of them in one publishDir folder and the rest in another publishDir folder. What are my options here?
Can you specify several publishDir directives within one process and give each a separate list of files?
Maxime Garcia
@MaxUlysse
Feb 10 2017 15:13 UTC
@boulund If I'm not mistaken, it's not possible yet, see #256
Félix C. Morency
@fmorency
Feb 10 2017 16:18 UTC
@pditommaso what storage type is used for the root device on aws?
Félix C. Morency
@fmorency
Feb 10 2017 18:44 UTC
also, can one use a private docker repo (on duckerhub for example) with NF?
Paolo Di Tommaso
@pditommaso
Feb 10 2017 20:37 UTC
@boulund
Can you specify several publishDir directives within one process and give each a separate list of files?
Yes, you can use a closure a value for saveAs option to dynamically define the target path of the publishDir
Paolo Di Tommaso
@pditommaso
Feb 10 2017 21:05 UTC
what storage type is used for the root device on aws?
the one defined for the specified AMI
one use a private docker repo (on duckerhub for example) with NF?
Nope, nextflow-io/nextflow#45