These are chat archives for nextflow-io/nextflow

10th
Mar 2017
amacbride
@amacbride
Mar 10 2017 04:24
@pditommaso FYI, for some reason the Github link on the nextflow.io front page disappeared.
(looks like it might be a CSS problem)
Paolo Di Tommaso
@pditommaso
Mar 10 2017 07:49
@amacbride do you mean the GitHub black ribbon on the top-right corner? weird, I can see it. Maybe a temporary hiccup ?
Manuel
@kohleman
Mar 10 2017 10:34

I tried to resume a couple of workflows. Some of them give me this error message:
ERROR ~ Can't create cache DB: /cluster/lsf/nextflow/.nextflow/cache/147c596b-fbf5-4049-b077-b60ff862295a/db

What is this about?

Paolo Di Tommaso
@pditommaso
Mar 10 2017 11:08
Are u sure there isn't a running instance on that folder or NF has not been killed abruptly?
Try to check with nextflow log command
Manuel
@kohleman
Mar 10 2017 11:08
Ok, I will check this
Paolo Di Tommaso
@pditommaso
Mar 10 2017 11:10
What is the status reported of the last run?
Manuel
@kohleman
Mar 10 2017 11:12
faile:
failed:
.command.run.1: line 103: 54942 Terminated nxf_trace "$pid" .command.trace
Paolo Di Tommaso
@pditommaso
Mar 10 2017 11:29
Um, if I are sure there's no NF instance running, look for a file named LOCK in the following dir and delete it
/cluster/lsf/nextflow/.nextflow/cache/147c596b-fbf5-4049-b077-b60ff862295a/db
Manuel
@kohleman
Mar 10 2017 12:52
Ok, thanks. I ran more than one nextflow workflow in parallel.
Paolo Di Tommaso
@pditommaso
Mar 10 2017 13:19
in that case I would suggest to use a different launch instance for each run