These are chat archives for nextflow-io/nextflow

1st
May 2017
Félix C. Morency
@fmorency
May 01 2017 13:51 UTC

usually pythonists tend to be really scared by NF

It's not that bad ;)

Paolo Di Tommaso
@pditommaso
May 01 2017 14:42 UTC
fortunately :D
Félix C. Morency
@fmorency
May 01 2017 14:48 UTC
@pditommaso, any idea what could cause a .command.po: Permission denied?
Paolo Di Tommaso
@pditommaso
May 01 2017 14:51 UTC
that file is a named pipe make sure your FS support it
Félix C. Morency
@fmorency
May 01 2017 14:52 UTC
mmm is it always used by NF or is this pipeline specific?
Paolo Di Tommaso
@pditommaso
May 01 2017 14:53 UTC
always
when you are getting this error ?
Félix C. Morency
@fmorency
May 01 2017 14:53 UTC
Wierd. Some pipelines can run on the cluster (shared FS is SMB) and some are just blocking
Job are being scheduled and then nothing happens. Everything blocks there
Paolo Di Tommaso
@pditommaso
May 01 2017 14:54 UTC
SMB stands for Samba ?
Félix C. Morency
@fmorency
May 01 2017 14:55 UTC
yes
Paolo Di Tommaso
@pditommaso
May 01 2017 14:57 UTC
no experience with that, tho I was thinking it was used mainly for Windows interoperability
Félix C. Morency
@fmorency
May 01 2017 14:59 UTC
mmm
Félix C. Morency
@fmorency
May 01 2017 15:22 UTC
@pditommaso I don't see the .po file in my (successful) pipeline run
is this created while the process is running?
Paolo Di Tommaso
@pditommaso
May 01 2017 15:23 UTC
it's automatically deleted (along with .pe)
Félix C. Morency
@fmorency
May 01 2017 15:23 UTC
I see
Paolo Di Tommaso
@pditommaso
May 01 2017 15:23 UTC
you can see it in the .command.run script