These are chat archives for nextflow-io/nextflow

1st
May 2017
Félix C. Morency
@fmorency
May 01 2017 13:51

usually pythonists tend to be really scared by NF

It's not that bad ;)

Paolo Di Tommaso
@pditommaso
May 01 2017 14:42
fortunately :D
Félix C. Morency
@fmorency
May 01 2017 14:48
@pditommaso, any idea what could cause a .command.po: Permission denied?
Paolo Di Tommaso
@pditommaso
May 01 2017 14:51
that file is a named pipe make sure your FS support it
Félix C. Morency
@fmorency
May 01 2017 14:52
mmm is it always used by NF or is this pipeline specific?
Paolo Di Tommaso
@pditommaso
May 01 2017 14:53
always
when you are getting this error ?
Félix C. Morency
@fmorency
May 01 2017 14:53
Wierd. Some pipelines can run on the cluster (shared FS is SMB) and some are just blocking
Job are being scheduled and then nothing happens. Everything blocks there
Paolo Di Tommaso
@pditommaso
May 01 2017 14:54
SMB stands for Samba ?
Félix C. Morency
@fmorency
May 01 2017 14:55
yes
Paolo Di Tommaso
@pditommaso
May 01 2017 14:57
no experience with that, tho I was thinking it was used mainly for Windows interoperability
Félix C. Morency
@fmorency
May 01 2017 14:59
mmm
Félix C. Morency
@fmorency
May 01 2017 15:22
@pditommaso I don't see the .po file in my (successful) pipeline run
is this created while the process is running?
Paolo Di Tommaso
@pditommaso
May 01 2017 15:23
it's automatically deleted (along with .pe)
Félix C. Morency
@fmorency
May 01 2017 15:23
I see
Paolo Di Tommaso
@pditommaso
May 01 2017 15:23
you can see it in the .command.run script