These are chat archives for nextflow-io/nextflow

31st
May 2017
Mike Smoot
@mes5k
May 31 2017 19:47
Hi @pditommaso, I'm running into a problem with the nextflow process itself isn't terminating as expected. Here's what I see in the nextflow log: https://pastebin.com/FSw04Uh1. Nextflow is running on a slurm cluster. I understand and can fix the error you see, but it's not clear why the nextflow process itself isn't exiting. Any ideas?
I'm also not seeing the workflow.onComplete block execute as I'd expect.
Paolo Di Tommaso
@pditommaso
May 31 2017 20:24
do you mean the pipeline hangs ?
Mike Smoot
@mes5k
May 31 2017 20:35
Yup
Paolo Di Tommaso
@pditommaso
May 31 2017 20:35
to little information, I would need the complete log
Mike Smoot
@mes5k
May 31 2017 20:37
one moment
Mike Smoot
@mes5k
May 31 2017 20:43
Here's the full log: https://pastebin.com/ZHXg4jni
Paolo Di Tommaso
@pditommaso
May 31 2017 20:51
ll check tomorrow, can't now
Mike Smoot
@mes5k
May 31 2017 20:52
thanks!
Paolo Di Tommaso
@pditommaso
May 31 2017 20:53
I guess it will follow a long discussion on that, it would be better if you could open an issue on GH
Mike Smoot
@mes5k
May 31 2017 20:54
sure
Mike Smoot
@mes5k
May 31 2017 23:34
@pditommaso and because nothing at all is working today, I've also run into this bug: nextflow-io/nextflow#92. We can't get past this at the moment, so if there's any debugging you'd like me to do to diagnose this I'm happy to help when I get in tomorrow.