These are chat archives for nextflow-io/nextflow

7th
Jul 2017
Brian Reichholf
@breichholf
Jul 07 2017 08:06
@pditommaso Sorry for the late reply. Yes, stepwiseAlign has the same multiplicity, just needs to be done in a specific order, which I could arrange initially with an according (ordered?)list/list of tuples.
Paolo Di Tommaso
@pditommaso
Jul 07 2017 08:08
if so, I'm not understanding why you want to use each
Brian Reichholf
@breichholf
Jul 07 2017 08:10
I probably don't understand how I should be using each (or what I should be using instead), to run a process sequentially based on the input variable, rather than in parallel.
Paolo Di Tommaso
@pditommaso
Jul 07 2017 08:11
um in NF all process are executed in parallel as long as you provide multiple inputs
each is used in special cases when you need to repeat the execution over some values
however once you have a dependency between A -> B
B is executed as many times as A
Brian Reichholf
@breichholf
Jul 07 2017 08:22
I see, so then it's probably easier to just run all sequentially in all of the processes.
Paolo Di Tommaso
@pditommaso
Jul 07 2017 08:24
I guess so, if you can create a skeleton project I could help you with the base logic
Brian Reichholf
@breichholf
Jul 07 2017 09:46
Sure, just setting it up.