These are chat archives for nextflow-io/nextflow

22nd
Oct 2017
Alexander Peltzer
@apeltzer
Oct 22 2017 08:01
@wenbostar This https://hub.docker.com/r/broadinstitute/gatk-nightly/ contains just GATK4. It should be linked I guess properly inside the container, that means you dont need the 'java -jar gatk.jar' thing upfront. Look it up here how to call it: https://github.com/broadinstitute/gatk#running