These are chat archives for nextflow-io/nextflow
rm -rf workis the easiest way
nextflow cleangive you more control on which run you want to delete
Hi. I'm trying to move my nextflow pipeline over to use conda for the dependencies. However, I keep receiving a 'Text file busy' error when I launch it using LSF. I have also tried a simple qc pipeline with a single conda env and still receive the following:
Command error: /usr/bin/env: Rscript: Text file busy
Sorry if this is a problem with my setup / HPC, I can't work it out.
Rscript, probably the latter. It would mean the file system is still busy with that executable. I can't exclude other possibilities (not a deeply experienced UNIX hacker myself), but that has definitely been my experience.
bash .command.runand ask to your sysadmins
whendirective in the process. I have just saw that the
whendirective is ignored if it is not right before the
scriptsection. Also, if the
publishDirdirective is just above the
publishDiris not executed.