These are chat archives for nextflow-io/nextflow
It seems that nextflow is not happy to be run within the same folder as another concurrent nextflow process… even with -w set to a unique location. will disabling cache help? or do i need mktmp for each execution?
I ended up making a directory tree continaing one directory for each nf workflow… anybody know of a simpler path?
-woption you should not have any problem
/etc/ecs/ecs.configfile it set to 2m.
arrgh - i just looked at jobs that were supposed to run over the weekend they are sitting on the first step due to a missing dependency at the end of a pipe. pipefail would have caused those jobs to fail immediately and let me know. I’m adding
process.shell = ['/bin/bash','-o','pipefail']
as suggested by paolo above… but I wonder if this should be a default setting? Any thoughts on that?