These are chat archives for nextflow-io/nextflow

19th
Aug 2018
Karin Lagesen
@karinlag
Aug 19 2018 13:36
ok, so I've managed to screw up something here
karinlag@enki:~$ wget -qO- https://get.nextflow.io | bash
bash: line 0: exec: -v: invalid option
exec: usage: exec [-cl] [-a name] [command [arguments ...]] [redirection ...]
karinlag@enki:~$
that\s what I get when I try to download nextflow
anybody got any idea of what the heck I've done wrong?
I do get file called nextflow there but:
karinlag@enki:~$ nextflow -h
bash: line 0: exec: -h: invalid option
exec: usage: exec [-cl] [-a name] [command [arguments ...]] [redirection ...]
karinlag@enki:~$
Edgar
@edgano
Aug 19 2018 13:47
Do you hava Java installed?
Karin Lagesen
@karinlag
Aug 19 2018 13:50
yes
arinlag@enki:~/PycharmProjects/testdata/short$ java -version
openjdk version "1.8.0_121"
OpenJDK Runtime Environment (Zulu 8.20.0.5-linux64) (build 1.8.0_121-b15)
OpenJDK 64-Bit Server VM (Zulu 8.20.0.5-linux64) (build 25.121-b15, mixed mode)
karinlag@enki:~/PycharmProjects/testdata/short$
Karin Lagesen
@karinlag
Aug 19 2018 15:17
turned out I had screwed up something with java and anaconda, a reinstall of just about everything fixed it
Karin Lagesen
@karinlag
Aug 19 2018 16:04
where do I find out more about $task and processes? Documentation doesn't seem to be turning up anything much on that