These are chat archives for nextflow-io/nextflow

18th
Nov 2018
Krittin Phornsiricharoenphant
@sinonkt
Nov 18 2018 05:38 UTC

Hi folks, I want to directly dump json from file as stdout of command when my custom flag paramsSchema is on. how can i skipped nextflow banner & launching that was printed before. how can i purely dump as json over stdout.

nextflow run main.nf --params-schema

N E X T F L O W  ~  version 18.10.1
Launching `main.nf` [adoring_sinoussi] - revision: d64e35cad3
{
  "title": "test-nf",
  "description": "Simulated workload workflow",
  "type": "object”,
}
Krittin Phornsiricharoenphant
@sinonkt
Nov 18 2018 09:10 UTC
@pditommaso nextflow work really well with minio, and i just know that it’s not only implicitly downloading but also uploading according to publishDir like a charm!
BUCKET_DIR="s3://test"
nextflow run sinonkt/test-nf \
  -latest \
  -with-dag graph.dot \
  --publishDir $BUCKET_DIR/publish \
  --filesGlob “${BUCKET_DIR}/tests/*.txt" \
  --filePath ${BUCKET_DIR}/tests/data2.txt
Rad Suchecki
@rsuchecki
Nov 18 2018 23:27 UTC
@sinonkt
nextflow run main.nf --params-schema | tail -n+3