These are chat archives for nextflow-io/nextflow

18th
Dec 2018
Tobias "Tobi" Schraink
@tobsecret
Dec 18 2018 02:08
can I just give all of y'all NF devs a :clap: ? You deserve it! Thanks for the hard work and for making me write actually maintainable pipelines
Krittin Phornsiricharoenphant
@sinonkt
Dec 18 2018 06:28
@stevekm Thank you for your advice. :)
micans
@micans
Dec 18 2018 15:23
@tobsecret seconded, thirded, and the whole harmonic series :notes:
micans
@micans
Dec 18 2018 17:25

Question ... I'd like to get my hand on as much meta-data as possible; if possible including any information used from earlier runs used via -resume. I'd also like to include my own pipeline worfklow.oncomplete information. Example:

[7a/c4e65b] multiqc            : [100%] 1 of 1, cached: 1
[49/90fb5d] merge_featureCounts: [100%] 2 of 2
=========================================
star low mapping: 0
hisat2 low mapping: 0
total read count: 13506713
=========================================
Completed at: 18-Dec-2018 16:51:58
Duration    : 21.3s
CPU hours   : 30.3 (100% cached)
Succeeded   : 4
Cached      : 46

Ideally I'd like and option to have this (and more information) to be written to file in some format so I can automate reporting ... is this perhaps planned in some way for the future? Hope this is not too vague ..

Paolo Di Tommaso
@pditommaso
Dec 18 2018 17:27
==> feature request
micans
@micans
Dec 18 2018 17:27
OK, I've passed the first filter then I hope :-)
Paolo Di Tommaso
@pditommaso
Dec 18 2018 17:29
LOL
micans
@micans
Dec 18 2018 17:30
The filter of hopeless feature requests ...