These are chat archives for nextflow-io/nextflow

Jan 2019
Stephen Kelly
Jan 03 22:42

I am having an issue where nextflow is able to create the temp file in the workDir but then I get this error message /bin/bash: line 0: cd: /scratch/maxh/RNAseq/temp/a2/925b5b228449d8654531763ef71640: No such file or directory

My first thought is that the command is being executed on a different system/node than where the directory is being created. Or did you fix this with autoMount?