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Markdown parsing: Fix all the e… Add new markdown rules to templ… Apparently whitespace isn't eno… and 2 more (compare)
-w ~/repois a great idea either. Not sure what that will do. Any reason why you can't leave that as the default? (will end up being
-d, -dockerize Launch nextflow via Docker (experimental)
OK I got it:
It's not possible to use volume mounting with the docker executor, but using the machine executor it's possible to mount local directories to your running Docker containers. You can learn more about the machine executor here on our docs page.
singularity pull --name nf-core-deepvariant.simg docker://nfcore/deepvariant
Thanks for addressing,
the "problem" with building it, is that it takes cpu, so locally is not always a possibility. and if you are working on "GDPR proof " cluster you dont have that option.
of course it is easy to get around this by having an open cluster somewhere, but that means another layer for someone to set up.