nf-core/Lobby

We have moved over to slack, get your invite here (!): http://nf-core-invite.herokuapp.com and visit us https://nfcore.slack.com

Sven F.

@sven1103

so i voted for an own registry

Phil Ewels

@ewels

ah right, and then I said no we don't want our own hardware involved probably

Sven F.

@sven1103

or we get rid of singularity container registry support

yes, I remember you said sth like that

which I agree in principle

Phil Ewels

@ewels

I'm starting to wonder if we are going to need to set up some hardware at some point to keep scaling - singularity images and larger test sets

Sven F.

@sven1103

Lets put this on out phone call agenda next week

can discuss some ideas

Phil Ewels

@ewels

:+1:

Sven F.

@sven1103

hardware and storage should not be an issue here

Phil Ewels

@ewels

hah, famous last words...

Sven F.

@sven1103

I am more cautious of maintenance effort for self-hosted systems

thats what bothers me more

Phil Ewels

@ewels

true

Paolo Di Tommaso

@pditommaso

I think singularity hub is going to be deprecated in favour of Singularity library

Sven F.

@sven1103

ah nice

thanks for sharing Paolo!

Paolo Di Tommaso

@pditommaso

not sure, but I think they are going to provide an on-premises version

BTW have you moved to slack ?

Sven F.

@sven1103

yup

you can join using this link http://nf-core-invite.herokuapp.com

Paolo Di Tommaso

@pditommaso

I think I've joined but I don't remember the login url anymore .. this why I don't like slack :satisfied:

KochTobi

@KochTobi

https://nf-core.slack.com/

Sven F.

@sven1103

I think I've joined but I don't remember the login url anymore .. this why I don't like slack :satisfied:

:joy:

KochTobi

@KochTobi

damn without the -

Sven F.

@sven1103

https://nfcore.slack.com/

yup

Paolo Di Tommaso

@pditommaso

ahhh :joy:

KochTobi

@KochTobi

always gets me....

Sven F.

@sven1103

nf-core was already taken

-.-

Paolo Di Tommaso

@pditommaso

ohh, that's why I was not able to login there :satisfied:

KochTobi

@KochTobi

Manage passwords ...

Sven F.

@sven1103

omg

Paolo Di Tommaso

@pditommaso

this think they have a different password for each channel I will never digest ..

Sven F.

@sven1103

yeah, this is kind of annyoing

Paolo Di Tommaso

@pditommaso

should I launch a nextflow channel on spectrum .. :satisfied:

Sven F.

@sven1103

huh, don't know this one

Phil Ewels

@ewels

That’s the one that’s just been bought by GutHub right?

@pditommaso - this is why I use the slack clients though! Keeps all of the different organisations together easily. Only need to do it once on mobile and once on desktop :)

Paolo Di Tommaso

@pditommaso

That’s the one that’s just been bought by GutHub right?

yep !

this is why I use the slack clients though

nice, to not sure I want another source of distraction ! :satisfied:

Qi ZHAO

@likelet

hi, a simple question. Why the $workDir in config file can not be recognized by NF

N E X T F L O W  ~  version 19.01.0
Launching `RNAseqPipe/main.nf` [thirsty_hamilton] - revision: a2f41a936f
This workflow requires Nextflow version 0.26 or greater -- You are running version 19.01.0
ERROR ~ GTF file not found: $workDir/Genome/gencode.chr22.gtf

 -- Check '.nextflow.log' file for details

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