nf-tower/community

Hi all!

Super hyped to be trying tower. The user experience has been impressive so far. 🚀

However, I could not get even a single workflow to execute on the Google Life Sciences backend.

I have set up this very minimal example below. Can someone please enlighten me what might be wrong?

#!/usr/bin/env nextflow

nextflow.enable.dsl=2

process echo_remote_file_content {

  container = "docker.io/taniguti/wf-cas9:latest"   // this does not work :(
  // container = "docker.io/docker/whalesay:latest" // this works!! both images are public

  input: path remote_file

  output: stdout emit: cat

  script: "cat $remote_file"
}

workflow {
  echo_remote_file_content(params.remote_file)
  println echo_remote_file_content.out.cat.view()
}

This is the error report:

Error executing process > 'echo_remote_file_content'

Caused by:
  Process `echo_remote_file_content` terminated with an error exit status (9)

Command executed:
  cat str.txt

Command exit status:
  9

Command output:
  (empty)

Command error:
  Execution failed: generic::failed_precondition: while running "nf-6f1c929e312542a7ee1699175d05f753-main": unexpected exit status 1 was not ignored

Work dir:
  gs://sensitive-bucket-name/scratch/1uc7mIoqwEIZV0/6f/1c929e312542a7ee1699175d05f753

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`