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  • 04:58
    jhlegarreta commented #2002
  • 04:57
    jhlegarreta edited #2002
  • 01:55
    jhlegarreta commented #2002
  • 01:15
    skoudoro commented #2002
  • Nov 11 23:53
    jhlegarreta opened #2002
  • Nov 09 00:24
    skoudoro commented #2000
  • Nov 09 00:24

    skoudoro on master

    split flow initial commit fixed and addressing comments minor docstring fix and 2 more (compare)

  • Nov 09 00:23
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  • Nov 08 15:14
    skoudoro commented #1862
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    skoudoro commented #2000
  • Nov 08 00:08
    Garyfallidis opened #2001
  • Nov 08 00:07

    Garyfallidis on doc_basic_interface

    initial setup for azure trigger azure rename some entry and 52 more (compare)

  • Nov 07 23:49
    ShreyasFadnavis commented #1919
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    ShreyasFadnavis commented #1919
  • Nov 07 23:31
    codecov[bot] commented #2000
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    codecov[bot] commented #2000
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    ShreyasFadnavis commented #2000
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  • Nov 07 23:24
    codecov[bot] commented #2000
Eleftherios Garyfallidis
@Garyfallidis
:roller_coaster: :roller_coaster: :roller_coaster:
BramshQamar
@BramshQamar
:fireworks:
Eleftherios Garyfallidis
@Garyfallidis
:rocket: :rocket: :rocket: :rocket: :rocket: :rocket:
Shreyas Fadnavis
@ShreyasFadnavis
πŸ‘ŒπŸ»πŸ‘ŒπŸ»πŸ‘ŒπŸ»πŸ‘ŒπŸ»πŸ‘ŒπŸ»πŸ”₯
Gabriel Girard
@gabknight
:thumbsup: :thumbsup:
Rafael Neto Henriques
@RafaelNH
Congrats to all ! Well done! Amazing !
Romulus
@romainviard
Thx u !! in hurry to try it
Paolo Avesani
@Paolopost
Really great achievement!
Eleftherios Garyfallidis
@Garyfallidis
:wine_glass:
Kirstie Whitaker
@KirstieJane
:scream_cat: :scream_cat: :scream_cat: Congratulations!
Eleftherios Garyfallidis
@Garyfallidis
Thank you!!! :smile:
Jean-Christophe Houde
@jchoude
Hey Elef, congrats on the release!
When I try to access dipy.org in Firefox, I get a certificate invalidity message. You might want to look into that @Garyfallidis @skoudoro
Eleftherios Garyfallidis
@Garyfallidis
Yes, should be resolved in a few days. We have applied for the SSL certificate.
Jean-Christophe Houde
@jchoude
:thumbsup:
Fang-Cheng Yeh
@FangChengYeh_twitter
Congratulations to the new DIPY and Website. It looks awesome!
Eleftherios Garyfallidis
@Garyfallidis
Thank you @FangChengYeh_twitter and all for your help all these years.
Fang-Cheng Yeh
@FangChengYeh_twitter
You are welcome. Wish I could help more if I knew how to code in python.
Eleftherios Garyfallidis
@Garyfallidis
Never late! :D
nis02002
@nis02002
Anyone please let me know how to load dataset from HCP with DIPY?
Eleftherios Garyfallidis
@Garyfallidis
Do you have the nifti images @nis02002 ? Can you try dipy_info?
Eleftherios Garyfallidis
@Garyfallidis
Eleftherios Garyfallidis
@Garyfallidis
alt
AlexBadea
@portokalh
I wonder if the dipy CSA implementation supports multiple b values. Many thanks!
Romulus
@romainviard
Hi all, could someone give me an hand ?
see that: import dipy
print(dipy.version) >>>> 1.0.0 It's ok but
import dipy.viz import window, actor >>>>Gives an error, I just wondering why ?
File "<ipython-input-61-930dc3d62dde>", line 6
import dipy.viz import window, actor
^
SyntaxError: invalid syntax
Eleftherios Garyfallidis
@Garyfallidis
@portokalh it will give reasonable result. Like an average ODF from the different shells. Make sure the shells are all spherical.
@romainviard from dipy.viz import window, actor
Romulus
@romainviard
@Garyfallidis Sorry I made an mistake when I wrote on gitter..."from dipy.viz import window, actor " didn't work on dipy1.0.0 (python 3) but works on dipy 0.14.0 (python 2.7), Do you confirm that it should work with the last version of dipy ? Thanks you
Eleftherios Garyfallidis
@Garyfallidis
Have you installed fury?
pip install fury
And yes it should work. I do confirm.
AlexBadea
@portokalh
thanks much @Garyfallidis !
Romulus
@romainviard
thanks @Garyfallidis you were right!!
Davis Bennett
@d-v-b
what would need to be done for registration in dipy to support masked images
Davis Bennett
@d-v-b
looks like adding properties to MutualInformationMetric
Romulus
@romainviard
Hi dipy's folks,
I'm using the great function dipy.stats.analysis.afq_profile…
And I 'm wondering two things :
  • Is it better to compute the profile on the full track/bundle (so multiple fibers) or on only one fiber (a cluster obtained using QuickBundles for example)?
  • If I want to do stats on different profiles (for example mean FA on the same tract for various subjects), how would you advice to correct statistics(multiple comparison, and espacially spacial correlation,) with Random Field Theory or another one ? In pratical with python and scipy ?
    Thanks a lot in advance,
nis02002
@nis02002
Anyone know does DIPY can do diffusion compartment imaging study?
Eleftherios Garyfallidis
@Garyfallidis
Hi @romainviard !
nis02002
@nis02002
DCI (diffusion compartment imaing) is more advanced than DTI
Eleftherios Garyfallidis
@Garyfallidis
@romainviard let me introduce you to @BramshQamar that is working on extending our statistical analysis framework and she can explain all the details to you. In short, we have a strategy for you to start with and happy to collaborate in trying new ideas.
nis02002
@nis02002
Or any other tool could implement compartment study will be great, thanks a lot
Eleftherios Garyfallidis
@Garyfallidis
@nis02002 do you have DCI data?
nis02002
@nis02002
i only have diffusion image data
i wonder can I fit the data into diffusion compartment model
nis02002
@nis02002
How can we calcuate the diffusion tensor D using tersor model?
like Apparent diffusion coefficnet?
Ariel Rokem
@arokem
@romainviard : regarding afq_profile, probably better to include multiple streamlines, rather than the centroid of a cluster (if that's what you meant)