fsl_anatare supported by/available in
nipype, thus you could just "recreate" the pipeline there. However, I'm not sure if that's more feasible than using
functioninterface. I would assume that someone also already looked at that!?
Salutations. Attempting to use
nipype.interfaces.slicer.BRAINSFit in a pipeline, but running into
No command "BRAINSFit" found errors. I have the latest version of Slicer installed at
/opt/Slicer and manually appended that directory and
/opt/Slicer/bin to my path. BRAINSFit runs correctly under bash:
Slicer --launch BRAINSFit
but won't work in nipype. Any ideas?