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  • Dec 06 11:36
    tsujigiri synchronize #541
  • Dec 06 11:36

    tsujigiri on fix-datadump

    !fixup Reduce number of queries… Make sure name clashes just fail (compare)

  • Dec 04 16:06

    dependabot[bot] on bundler

    (compare)

  • Dec 04 16:06
    dependabot[bot] commented #547
  • Dec 04 16:06
    philippbayer closed #547
  • Dec 04 16:06
    philippbayer commented #547
  • Dec 04 11:07
    tsujigiri synchronize #541
  • Dec 04 11:07

    tsujigiri on fix-datadump

    fixup! Refactor Zipfulldata spec (compare)

  • Dec 04 10:16
    tsujigiri synchronize #541
  • Dec 04 10:16

    tsujigiri on fix-datadump

    Reduce number of queries for ph… Update structure.sql with produ… Merge remote-tracking branch 'o… (compare)

  • Dec 04 10:12
    tsujigiri synchronize #541
  • Dec 04 10:12

    tsujigiri on fix-datadump

    Fix recommendify (#542) * Swit… Update ruby to 2.7.7 (#549) * … Bump tzinfo from 1.2.9 to 1.2.1… and 5 more (compare)

  • Dec 04 10:09
    tsujigiri synchronize #541
  • Dec 04 10:09

    tsujigiri on fix-datadump

    Reduce number of queries for ph… (compare)

  • Dec 02 14:04

    dependabot[bot] on bundler

    (compare)

  • Dec 02 14:03
    dependabot[bot] commented #548
  • Dec 02 14:03
    philippbayer closed #548
  • Dec 02 14:03
    philippbayer commented #548
  • Dec 02 13:35
    dependabot[bot] commented #547
  • Dec 02 13:35
    dependabot[bot] edited #547
philip_rhoades
@philip_rhoades:matrix.org
[m]
Oh right - I thought by now there might be some .org that could accept data from all the companies . .
Bastian Greshake Tzovaras
@gedankenstuecke
Some suppliers of microarray testing allow the upload from other sources, eg I think myheritagedna accepts the upload of 23andme data. It heavily depends on what kind of analyses you’re looking for (and sorry for the delay, currently traveling!)
mdelliot
@mdelliot
Hi! I was trying to download the openSNP genotype data and it looks like the 404 error is occuring again when I try to access: https://opensnp.org/data/zip/opensnp_datadump.current.zip
Just wondering if it can be fixed again?
Thanks!
andrewdemaris
@andrewdemaris
Hello! I was also having some issues downloading the data, as well as individual categories of genotype data based on phenotype. I got the email, but the link also went ot 4040
Philipp Bayer
@philippbayer
sorry we're all looking into it! there are two hosts, one for the server, one for the data, and they keep on losing connection for some weird reason
(the datadump link has been back for a while I think - currently works)
Dan Bolser
@CholoTook
Hello
I was wondering if you know what fraction of 'active' OpenSNP users have iPhon vs. Android?
I'm planning a project which can hopefully leverage the interest of OpenSNP users. Not sure if we need to focus on cross platform support or not... (obviously more is better, but if it's 90/10 one way or the other, that simplifies the decision for us).
BTW, I only recently learned you have a Patrion! (Fiona Nielsen mentioned it to me).
Bastian Greshake Tzovaras
@gedankenstuecke
hey dan! I don't think we have any data on that!
and thanks for becoming a patreon supporter! :)
Dan Bolser
@CholoTook
No problem, my pleasure
Can I still create a survey on the site to ask this question? Perhaps OS choice is genetic! ;-)
Bastian Greshake Tzovaras
@gedankenstuecke
haha, did you check if that's already there? :D
Dan Bolser
@CholoTook
I didn't think ...
CholoTook @CholoTook looks
CholoTook @CholoTook takes a long time to look...
Dan Bolser
@CholoTook
Can you hyperlink the icons on the home page to the relevant functions?
utf8=✓ <- nice touch
Dan Bolser
@CholoTook
Sorry all, I tried to create one, but I done it rong: https://opensnp.org/phenotypes/764
Can you help me fix it?
Also... heh... what's the plan with phenotypes?
Any link to the newsletter? e.g. cherry pick a handful of 'good' types and send them out once a month?
Browsing through the list of types is a bit daunting... we need a gamification expert, grant and 6 months... ;-)
Bastian Greshake Tzovaras
@gedankenstuecke
typically users should get an email notification about new phenotypes (if they opted in iirc) but @tsujigiri and i just discussed some email issues re spam classification the other day. there's also a somewhat gamified version of this on the users home page when logged in where it suggests "related" ones
but yeah, there'd be a ton of work that could be done :see_no_evil:
Dan Bolser
@CholoTook
Don't worry @gedankenstuecke, I'll get an intern or 2 :-)
In the meantime, can you help me fix my pheno?
Dan Bolser
@CholoTook
BTW, I'm serious about the interns, I've connected to the University of Cambridge Computer Science department to be involved in their 'summer project'
They get real businesses / projects to engage with a team of their students to build a software solution to x, y, z
I've pitched an idea involving a phenotype questionnaire system that we can use commercially for our stuff, but which can have a wider impact, e.g. for OpenSNP.
If nothing else it would be useful for them to learn how you did what you did before they try to build whatever it is they can manage.
Ideally they'd integrate your work and feed back to that (however, they own the copyright and IP according to the programme, so it's up to them if they want to contribute it to open source)
Bastian Greshake Tzovaras
@gedankenstuecke
sorry for the delay, just settling into a new job (now that i'm in the uk we need to get a pint some day!)
what do you think is wrong with the phenotype you made? :)
and yeah, i think the phenotyping system could definitely use a do-over and would be happy to chat with students about where it is right now and why :D
Dan Bolser
@CholoTook
Hehe... I have no excuse ;-)
Yup, Cambridge is closer than 'the other side of London' by a good margin... Are you close to Kings X?
My phenotype doesn't seem to have any options linked to it...
Are they all just free text?
Bastian Greshake Tzovaras
@gedankenstuecke
yep, all phenotypes are just free text, so there's nothing to fix :D
and yeah, i'm literally across the street from kings x, in the british library!
Dan Bolser
@CholoTook
Very nice!
So door to door you're probably about 50 minutes away from me now ;-)
I worked for the british library when I was just staring out :D
Here are the (very limited) details of the project I've proposed to the Cambridge CS undergrads (just for a bit of context): https://wiki.cam.ac.uk/cl-design-projects/Genomics_for_the_COVID_Endemic
In 2023, we expect there will be 119 students, so 20 project teams: 19 teams of 6 and 1 team of 5. We aim to advertise at least 22 design briefs, to allow for necessary cancellations.
The group project course runs for 8 weeks