These are chat archives for opencobra/cobrapy

10th
Jan 2018
Matthias K├Ânig
@matthiaskoenig
Jan 10 08:13
@cdiener and @Midnighter sounds very good to me. I like the warnings a lot which notify the user that something strange is going on in the mode. I agree the reversibility and flux bounds should be secondary, but definitely in agreement with the SBO.
Jorge Fernandez-de-Cossio-Diaz
@cossio
Jan 10 20:52
hi all
Does cobrapy support geometric FBA?
(geometricFBA in MATLAB's version of the package)
Please reply with @cossio so that I get notified, thanks
Christian Diener
@cdiener
Jan 10 22:01
@cossio currently not. However, it should be pretty easy to implement it in its own package. The actual linear problems don't look too complicated. The major idea is that cobrapy implements only the most common algorithms and everything else usually is its own package building on top of cobrapy. For instance like all the one at http://opencobra.github.io/cobrapy/packages/ .