The original metadata are in the raw files, so they can always be read. But for downstream manipulation/analysis (in my case converting to tiff, merging into one file, converting that into hdf5 and then using an analysis pipeline that has troubles dealing with TIFF files that include metadata).
What is the added value to have the metadata in the .tiff or hdf5 file?
Maybe I do not understand what kind of metadata is stored in a .ome.tiff file. Do you have a link that explains the importance of them?
dev.loci.wisc.edu/trac/software/...to the right places very soon.
git clone git://github.com/uw-loci/ticketsand then
git grep trac.openmicroscopyyou'll see 119 examples. :wink:
I'm sttrugling a bit with something that looked simple... Maybe you can help me ? Basically I want to use the [https://github.com/ome/bioformats/blob/develop/components/bio-formats-tools/src/loci/formats/tools/ImageConverter.java] (
ImageConverter) class within a Fiji plugin. Which dependency should I declare within my pom file ? I tried:
<dependency> <groupId>ome</groupId> <artifactId>pom-bio-formats</artifactId> <version>6.2.0</version> </dependency>
Which is in the Scijava Maven repository, but apparently IntelliJ do not find the
ImageConverterclass. I'm a bit out of options right now...