scattercould certainly always spin-up VMs.
Array[String] bla = arrayStruct.member(maybe to simple)
The following are open for voting. Votes shall be tallied on the 28th.
There were three issues which recently passed voting and are waiting on implementation:
Also I'd like to draw attention again to the Directory proposal, please do comment if you have anything to say as it's coming close to voting: openwdl/wdl#241
It's been a long time in coming, but the WDL Directory type PR is now open for voting. Votes will be accumulated over the next 10 days, please mark either +1 or -1 to show support (or lack thereof).
Feel free to make comments, but please note that you are voting on the PR as is. Comments can be taken as suggestions for future work or to explain why you're -1.
Just a note that the proposed spec change for Directory type has passed and is waiting an implementation. There's a Cromwell PR which implements this, it may or may not need a bit of refinement following the latest Directory discussions, but either way that should move quickly. I know there are many people who have been waiting patiently for this!
There's also a new spec change request: "Add 'None' to spec" openwdl/wdl#263
This proposes a "None" value for optional fields.
Please comment as you see fit
I'm not sure, the Broad publish some of their pipelines here (their specific "Data pre-processing for variant discovery" GitHub.
Hopefully this gives you some basic examples!