openworm/org.geppetto

Geppetto - Neuroscience Visualisation and Simulation Platform

Giovanni Idili

@gidili

actually @mattearnshaw can you give us a link of how to load that project from OSB? So we can try with the same

Matt Earnshaw

@mattearnshaw

@gidili http://0.0.0.0:3000/projects/acnet2/models?explorer=https%253A%252F%252Fraw.githubusercontent.com%252FOpenSourceBrain%252FACnet2%252Fmaster%252FneuroConstruct%252FgeneratedNeuroML2%252FTwoCell.net.nml#

it has to be persisted first then reloaded

Giovanni Idili

@gidili

@mattearnshaw thanks will look into it today

Jesus M

@jrmartin

@mattearnshaw Some commits were made to the view-state branches, the issue you were having should be gone now.

Matt Earnshaw

@mattearnshaw

thanks

Giovanni Idili

@gidili

@mattearnshaw can you confirm loading fine for you as well now?

Matt Earnshaw

@mattearnshaw

@gidili yeah seemed fine

Giovanni Idili

@gidili

@mattearnshaw @tarelli seeing an error on neuroml view-state branch when loading muscle cell sample and pvdr sample: https://gist.github.com/gidili/52819843e7161c9aae148fe22e6fe67b

Also c302 sample doesn't load anymore, not sure if it's the same issue though, @mattearnshaw would you mind having a look if any changes tat were made are causing this? It worked in the last release so it has to do with changes in that branch

Matt Earnshaw

@mattearnshaw

taking a look now...

Giovanni Idili

@gidili

@mattearnshaw thanks! Let me know if you see anything otherwise we can ask @tarelli who made some changes in there too

Matt Earnshaw

@mattearnshaw

@gidili pushed to view-state on neuroml model, fixes the above error but unfortunately another one reappears, at least with muscle model

will keep looking into it this afternoon

Giovanni Idili

@gidili

Thanks @mattearnshaw !

Matteo Cantarelli

@tarelli

@mattearnshaw org.geppetto.model.neuroml is broken

[ERROR] NeuroMLModelInterpreterService.java:[89,35] package org.neuroml.model.util.hdf5 does not exist

Matteo Cantarelli

@tarelli

@adrianq hey Adrian, Matt is having troubles using npm

the dashboard at 8081 works fine

so that redirect is working

loading a project doesn't

it seems like the websocket is failing

redirecting

@mattearnshaw is also on linux

have you come across the proxy redrect not working for websocket?

Matt Earnshaw

@mattearnshaw

in particular I get

WebSocket connection to 'ws://localhost:8081/org.geppetto.frontend/GeppettoServlet' failed: Connection closed before receiving a handshake response

when opening any project

Matt Earnshaw

@mattearnshaw

nevermind: fixed by upgrading virgo 3.6.3 -> 3.6.4

Adrian Quintana

@adrianq

sorry guys just saw the messsage

strange I am using 3.6.3

Matteo Cantarelli

@tarelli

yeah yeah

Adrian Quintana

@adrianq

I saw sth like once if you change the order in the webpack.config.dev

but anyway if you don't have therror that's great news

Adrian Quintana

@adrianq

hey @mattearnshaw this clause || this.playOptions.playAll you add to the condition in here https://github.com/openworm/org.geppetto.frontend/commit/a70b5b5a7a809e8de416e4ec3a4312063ffb6141#diff-c5e7a902afb4942c4d00594d780032a2R281

makes plot not refresh properly

what was the purposes?

Matteo Cantarelli

@tarelli

@mattearnshaw ping

Matt Earnshaw

@mattearnshaw

@adrianq I found that sometimes state variables were not all fetched when play all was requested. but I can't remember how to reproduce this now. if it's causing problems, try reverting it for now and if I come across the bug again we can take another look

Adrian Quintana

@adrianq

Ok! thanks!

Matteo Cantarelli

@tarelli

All: I canceled the Geppetto meeting for this Tuesday, I am at OCNS and will be presenting Geppetto on Tuesday

Matteo Cantarelli

@tarelli

People might find this informative: the slides of the presentation I gave at OCNS this month https://docs.google.com/presentation/d/e/2PACX-1vQTnb9GMidfwP9t8kG4ohwRHkbQi-AxDrW1K-8YJa2mn8CUXZjHKrDhedzYdgNuG167qgqws_5Wn_cx/pub?start=true&loop=false&delayms=60000&slide=id.g17ce71ba8b_0_0

Matt Earnshaw

@mattearnshaw

@tarelli live seems to be down, getting a Server Connection Error modal and

WebSocket connection to 'wss://live.geppetto.org///GeppettoServlet' failed: Error during WebSocket handshake: Unexpected response code: 500
connect @ MessageSocket.js:35)

Matteo Cantarelli

@tarelli

@mattearnshaw works for me TM have you tried from incognito mode?

Matt Earnshaw

@mattearnshaw

@tarelli hm, works incognito... but why?

Matteo Cantarelli

@tarelli

cache!

Matt Earnshaw

@mattearnshaw

@tarelli i'm wondering about the DROPBOX_INTEGRATION privilege: it seems like all users have this by default, but it would be useful if there were some method to verify whether the user has linked dropbox. it would seem like adding this privilege only when dropbox has been linked would be a good way, and maybe that is what was always intended for this?

Matteo Cantarelli

@tarelli

if I remember correctly that was intended more to let or not users link their dropbox, is it not enough to check wheter a specific user has set the token to see if dropbox is linked?

Matt Earnshaw

@mattearnshaw

@tarelli I don't think there's currently a method like getToken exposed on the frontend – I was going to add something like that but wanted to check the above first

Matteo Cantarelli

@tarelli

hi @/all at today’s Geppetto meeting we decided to move this channel to Slack as part of the OpenWorm Foundation, reply to this to get an invitation!

Yana Agun Siswanto

@bekicot

@tarelli Can you invite me?

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