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    mgxd on 20.0.x

    first quick attempt to add bids… fix json loading make the changes to use niworkf… and 52 more (compare)

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    rel(20.0.0): update changes (compare)

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    mgxd on master

    rel(20.0.0rc3): Update CHANGES,… Merge pull request #1994 from p… (compare)

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    oesteban on 20.0.0rc3

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  • Feb 20 21:11
    oesteban review_requested #1994
Chris Filo Gorgolewski
@chrisfilo
nope
Janne Kauttonen
@kauttoj
Hi all. We just set up Fmriprep to use in our lab. We use singularity (one large .img file) in cluster environment. I'm trying to figure out the typical requirements of the pipeline for cluster. Sometimes the pipeline appears to run smoothly and fast in 1h, sometimes it won't finish at all. Couple of questions:
  1. Say I have one subject with ~1000 standard BOLD slices + T1, and my machine has 12 cores and 30Gb of memory. What is a typical time to process such dataset using default parameters? Is it 1h, 5h or 10h? Any rough estimate is appreciated.
  2. What is typical increase in time when ICA-AROMA and/or FS recon is added? Is it going to double or triple the time?
Chris Filo Gorgolewski
@chrisfilo
Hey Janne - we try to answer most user support questions on https://neurostars.org/tags/fmriprep. This way the answers are easier to find for other users. It would be great if you could repost the question there. Someone will answer you soon.
Janne Kauttonen
@kauttoj
Ok, thanks. I'll continue there.