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  • 09:53

    kephale on scijava-compatible-pom

    Adjust way lwjgl natives are us… (compare)

  • 08:24

    kephale on scijava-compatible-pom

    Fix versions and repositories f… (compare)

  • 08:04

    kephale on scijava-compatible-pom

    Add more artifacts to version (compare)

  • Oct 16 19:17

    kephale on pyimagej-compatibility

    Update scenery version for Debo… (compare)

  • Oct 16 18:54

    kephale on scijava-compatible-pom

    build.gradle.kts: use pom-scija… Merge remote-tracking branch 'o… (compare)

  • Oct 16 09:45

    elect86 on tunePom

    done (compare)

  • Oct 15 22:14
    Domino2357 synchronize #434
  • Oct 15 22:14

    Domino2357 on sidechains_new

    Added a new proteins package to… Rainbow; RainbowTests: correcte… (compare)

  • Oct 15 21:54
    Domino2357 synchronize #434
  • Oct 15 21:54

    Domino2357 on sidechains_new

    SpaceFillingExample: changed ac… (compare)

  • Oct 15 21:50
    Domino2357 synchronize #434
  • Oct 15 21:50

    Domino2357 on sidechains_new

    VRSidechainsExample: refactored… (compare)

  • Oct 15 21:31
    Domino2357 synchronize #434
  • Oct 15 21:31

    Domino2357 on sidechains_new

    Remaining changes from moving p… (compare)

  • Oct 15 21:31
    Domino2357 synchronize #434
  • Oct 15 21:31

    Domino2357 on sidechains_new

    Put everything proteins related… StickandBallProteinModel: chang… AminoAcidsStickandBall: fixed f… and 1 more (compare)

  • Oct 15 21:18
    Domino2357 synchronize #428
  • Oct 15 21:18

    Domino2357 on space_filling_diagram

    PubChemElemens_all.json: moved … (compare)

  • Oct 15 21:13
    Domino2357 synchronize #418
  • Oct 15 21:13

    Domino2357 on boundingBoxBugBrotein

    Curve: added bounding box again… RibbondiagramTests: fixed tests… (compare)

Ulrik Günther
@skalarproduktraum
:+1: i realised just now thoughh that i might have some outdated deps, i'll test again and let you know of the result
Philipp Hanslovsky
@hanslovsky
@skalarproduktraum can you share the stacktrace?
Ulrik Günther
@skalarproduktraum
@hanslovsky would love to, but there's no stacktrace, only java.lang.NullPointerException on the REPL output xD
as said, the source might be garbled deps, i'll fix that and try it again
Kimmy Costa
@kimmy_costa_gitlab
Hi everyone !
We have a small trouble figuring out how to integrate a gamepad on Scenery. Does anyone have a clue ? Thanks in advance !
Giuseppe Barbieri
@elect86
@skalarproduktraum
Giuseppe Barbieri
@elect86
is imglib2-ui at the end deprecated or not?
Philipp Hanslovsky
@hanslovsky
@skalarproduktraum I installed SciView (from the SciView update site) and scripting-kotlin (from the ntakt) update site and I saw that SciView installs kotlin-compiler-embeddable and other jars that are part of the shaded scripting-kotlin jar. There may be some friction there.
Kyle I S Harrington
@kephale
@hanslovsky the SciView update site is being deprecated
we've switched to using a new update site for each major release
Philipp Hanslovsky
@hanslovsky
Thanks @kephale I will try when I get a chance
Ulrik Günther
@skalarproduktraum
@kimmy_costa_gitlab the gamepad should actually work right out of the box. if it's connected e.g. via bluetooth on your master node (you have an xbox controller, right?), then you should be able to move around using it. for customization of gamepad control, have a look at ProteinComparisonExample which is in the latest commit on the branch that's running on your cave, serialization-improvements, and also here
Kimmy Costa
@kimmy_costa_gitlab
@skalarproduktraum yes that's what I thought by looking at the code ! We do have an xbox controller and we connected it to our master which is why I found weird that I didn't work right away.
@skalarproduktraum we will try to look at the example thanks !
Tobias Pietzsch
@tpietzsch

@elect86

is imglib2-ui at the end deprecated or not?

yes, it is deprecated
Giuseppe Barbieri
@elect86
thanks Tobias
NicoKiaru
@NicoKiaru
Do you have somewhere a simple groovy script that can add a SourceAndConverter object into sciview ?
Philipp Hanslovsky
@hanslovsky

groovy

Are you trying conjure the wrath of @skalarproduktraum? (Not kotlin :laughing: )

Ulrik Günther
@skalarproduktraum
kotlin is more groovy than groovy! 🕺
i'll check @NicoKiaru
i remember you asked for being able to feed SourceAndConverter in directly, but i might have forgotten about that
unfortunately i don't have an example script at hand, maybe @kephale has something?
Kyle I S Harrington
@kephale
ya i did the SACs after you got all of the hard stuff going under the hood iirc
i don't have any scripts, but i think we could help out with getting it to work
@NicoKiaru note that we've switched out update site strategy https://docs.scenery.graphics/sciview/development/update-sites
i would suggest using https://sites.imagej.net/sciview-ageratum/ right now instead of SciView-Unstable
Philipp Hanslovsky
@hanslovsky
FYI, I just tried installing scripting-kotlin from ntakt update site and sciview argentum but they are not compatible :cry: I just tried the script interpreter but it greets me with this error message when executing Kotlin code:
Expecting class implementing GetScriptingClassByClassLoader in the hostConfiguration[getScriptingClass], got kotlin.script.experimental.jvm.JvmGetScriptingClass@0
What kotlin version does SciView use? I see GetScriptingClassByClassLoader for versions 1.4.30 and 1.5.0-M1 but not 1.4.31.
Kyle I S Harrington
@kephale
@hanslovsky i guess it is complicated when both of us are shipping kotlin deps. would it be possible to align via pom-scijava insteadl?
eep
i see 1.4.20 on the update site
Ulrik Günther
@skalarproduktraum
i have 1.4.32 on a PR atm
Kyle I S Harrington
@kephale
it is looking like the gradle jitpacks and stuff are finally starting to work, but the idea was that https://sites.imagej.net/sciview-ageratum/ would be the update site for the last maven build
then we would do at least a minor if not major bump for gradle (e.g. actually using semvar properly)
and cut a fresh update site
it looks like pom-scijava is behind on kotlin though
@hanslovsky you're using 1.4.30?
Kyle I S Harrington
@kephale
happy to align the update site to match ntakt for now
Philipp Hanslovsky
@hanslovsky

would it be possible to align via pom-scijava insteadl?

Last time I checked it was on 1.4.20 or older so I would rather not do that. It will likely be more complicated than that because scripting-kotlin needs to be distributed as a shaded jar including kotlin-compiler-embeddable and shaded JetBrains fork of trove. Otherwise, the compiler will fetch the incorrect classes from standard GNU trove. We could have a kotlin-compiler-embeddable-shaded jar in SciJava space that both SciView and scripting-kotlin could depend on. (Other dependencies may have kotlin-compiler-embeddable as runtime dependency, making things a little hairy when installing into scijava.app.directory)

@hanslovsky you're using 1.4.30?

Yes. I could update to 1.4.31 and see if that works

Kyle I S Harrington
@kephale
arg i see
ok if you want to push to 1.4.31 or 1.4.32 then we can go up to those as well (i'd have to check first of course)
Philipp Hanslovsky
@hanslovsky
Yeah, the annoying JetBrains fork of trove is what makes everything so hard and they do not show any intent of shading it themselves. It would not be a problem if they forked version 3 but they forked version 1...
Ulrik Günther
@skalarproduktraum
maybe we should push them towards thaat
i actually have a version of that included with sciview, but i changed the group id so it doesn't clash with anything :-D