Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Repo info
Activity
  • Sep 17 17:39

    Domino2357 on protein_builder

    VRControllerExample.kt,VRSelect… VRControllerExample.kt,VRGRab.k… SelectionWheel: move wheel node… and 18 more (compare)

  • Sep 17 15:18

    ctrueden on scijava-bom

    WIP: use pom-scijava as impleme… (compare)

  • Sep 17 11:29

    kephale on scijava-common

    Hard code scijava-common versio… (compare)

  • Sep 14 20:30

    kephale on kotlin-versions

    (compare)

  • Sep 14 20:29

    kephale on master

    Test kotlinx-coroutines-core 1.… Fix version Update versions for kotlin-stdl… and 1 more (compare)

  • Sep 14 20:29
    kephale closed #401
  • Sep 14 20:29
    kephale opened #401
  • Sep 14 20:20

    kephale on kotlin-versions

    Update versions for kotlin-stdl… (compare)

  • Sep 14 15:13

    kephale on kotlin-versions

    Fix version (compare)

  • Sep 14 15:07

    kephale on kotlin-versions

    Test kotlinx-coroutines-core 1.… (compare)

  • Sep 14 14:30

    kephale on master

    Find -bom and make dependency t… Fix bom dependency finding Add jackson fix and 1 more (compare)

  • Sep 14 14:30
    kephale closed #400
  • Sep 14 14:29
    kephale opened #400
  • Sep 14 14:14
    kephale closed #443
  • Sep 14 14:14
    kephale opened #443
  • Sep 14 13:50

    kephale on pom-bom-fix

    Add jackson fix (compare)

  • Sep 14 13:37

    kephale on pom-bom-fix

    Fix bom dependency finding (compare)

  • Sep 14 12:41

    kephale on pom-bom-fix

    Find -bom and make dependency t… (compare)

  • Sep 14 11:37

    kephale on master

    Remove hardcoded log.level from… (compare)

  • Sep 14 11:31

    kephale on jitpack-pom

    (compare)

Kyle I S Harrington
@kephale
eep
i see 1.4.20 on the update site
Ulrik Günther
@skalarproduktraum
i have 1.4.32 on a PR atm
Kyle I S Harrington
@kephale
it is looking like the gradle jitpacks and stuff are finally starting to work, but the idea was that https://sites.imagej.net/sciview-ageratum/ would be the update site for the last maven build
then we would do at least a minor if not major bump for gradle (e.g. actually using semvar properly)
and cut a fresh update site
it looks like pom-scijava is behind on kotlin though
@hanslovsky you're using 1.4.30?
Kyle I S Harrington
@kephale
happy to align the update site to match ntakt for now
Philipp Hanslovsky
@hanslovsky

would it be possible to align via pom-scijava insteadl?

Last time I checked it was on 1.4.20 or older so I would rather not do that. It will likely be more complicated than that because scripting-kotlin needs to be distributed as a shaded jar including kotlin-compiler-embeddable and shaded JetBrains fork of trove. Otherwise, the compiler will fetch the incorrect classes from standard GNU trove. We could have a kotlin-compiler-embeddable-shaded jar in SciJava space that both SciView and scripting-kotlin could depend on. (Other dependencies may have kotlin-compiler-embeddable as runtime dependency, making things a little hairy when installing into scijava.app.directory)

@hanslovsky you're using 1.4.30?

Yes. I could update to 1.4.31 and see if that works

Kyle I S Harrington
@kephale
arg i see
ok if you want to push to 1.4.31 or 1.4.32 then we can go up to those as well (i'd have to check first of course)
Philipp Hanslovsky
@hanslovsky
Yeah, the annoying JetBrains fork of trove is what makes everything so hard and they do not show any intent of shading it themselves. It would not be a problem if they forked version 3 but they forked version 1...
Ulrik Günther
@skalarproduktraum
maybe we should push them towards thaat
i actually have a version of that included with sciview, but i changed the group id so it doesn't clash with anything :-D
Philipp Hanslovsky
@hanslovsky

maybe we should push them towards thaat

Would be great if they changed it :thumbsup:

Philipp Hanslovsky
@hanslovsky
So I deleted all jars with kotlin version 1.4.20 in Fiji.app/jars and kotlin-scripting worked inside the Script Interpreter but not in SciView (NullPointerException). Gotta run now
Ulrik Günther
@skalarproduktraum
@hanslovsky that's the same issue i had :(
Tobias Pietzsch
@tpietzsch
Is there a ntakt gitter channel?
Ulrik Günther
@skalarproduktraum
what is ntakt?
Kyle I S Harrington
@kephale
ntakt == imklib2
Jan Eglinger
@imagejan
If you guys get scripting-kotlin work reliably, it would be awesome to have it shipped with core Fiji (i.e. on the Java-8 update site) — and bump kotlin to 1.4.31 in pom-scijava — so that it’s accessible as script language for all users!
Philipp Hanslovsky
@hanslovsky
Yes, that is the plan in the long term. It works reliably if installed on its own but there will always be issues if another jar depends on kotlin-compiler-embeddable. Probably best to create a shaded jar of that in the SciJava org and then have downstream depend on that
@skalarproduktraum https://github.com/saalfeldlab/ntakt fka imklib
Ulrik Günther
@skalarproduktraum
@hanslovsky supercool! i saw you're having publishing to maven in the pipeline, if you need inspiration, check out the scenery build scripts that @elect86 built, they support signing and everything needed to publish to sonatype :+1:
Ulrik Günther
@skalarproduktraum
new docs, everyone! this time on gamepad input handling: https://docs.scenery.graphics/scenery/controls-and-input-handling/gamepads
Domino2357
@Domino2357
Pretty cool article, thanks for sharing!
Ulrik Günther
@skalarproduktraum
your are most welcome, @Domino2357 :+1:
Domino2357
@Domino2357
Does gitter have some sort of search function?
Giuseppe Barbieri
@elect86
yes, but it suxs
left corner, on top
Domino2357
@Domino2357
seems to work better than threading at least :D
thanks!
Aryaman Gupta
@aryaman-gupta
I am facing issues with using the composite build of sciview and scenery, and I would appreciate any suggestions
I am using the composite build as is available on the latest version of sciview, with scenery included in the settings.gradle.kts file. However, while scenery seems to be imported by gradle, and I can see both scenery and sciview tasks in the Gradle window on the right of IntelliJ, scenery does not appear in the project view on the left and I cannot open scenery source files
Does anyone know what may be wrong?
Giuseppe Barbieri
@elect86
It might not perform the substitution at the end, can I have a look sometimes tomorrow or so?
2 replies
Giuseppe Barbieri
@elect86
@skalarproduktraum it looks like we might have a dep issue with imagej:mesh, https://github.com/scenerygraphics/sciview/commit/622d0dba6ab829f7d5b1da0539294bc909ebbfb7#r50038119
Domino2357
@Domino2357
Maybe @skalarproduktraum or @elect86 you can have a quick glance at #415 ? This is probably trivial, but I am not seeing it at the moment.
1 reply
Ulrik Günther
@skalarproduktraum
@Domino2357 see my reply :+1:
Giuseppe Barbieri
@elect86

Maybe @skalarproduktraum or @elect86 you can have a quick glance at #415 ? This is probably trivial, but I am not seeing it at the moment.

404

Ulrik Günther
@skalarproduktraum
Domino2357
@Domino2357

@Domino2357 see my reply :+1:

Wow, that was quick! Thanks!

Ulrik Günther
@skalarproduktraum
@Domino2357 i was puzzled by the same issue a while ago :-D
Jan T
@moreApi
How can I make SciView respect origin = Origin.Centerof a volume?
Ulrik Günther
@skalarproduktraum

sooooooooo, here's a puzzle for everyone: i am currently preparing docker images to run scenery and sciview (and our graphical CI stuff), and i have encountered an issue there: after 34 (of 38) integration tests/examples, the next example fails at creating a vulkan instance, either complaining that the driver is incompatible, or that i requested an extension that's not available. i have figured out/done:

  1. the driver is definitely compatible
  2. the example is not requesting any extensions
  3. it doesn't matter in which order the examples run, random or not, example 35 fails -- actually both on my local machine and on the ci xD
  4. i have fixed all gpu memory leaks i could find, and there are no more errors reported by the validations layers
  5. the time is also set correctly (this one is for @elect86 :-D)

any ideas? is it the moon? the constellation of the planets? solar winds?

55 replies
@moreApi what kind of volume is it? raivolume, bufferedvolume,...?
Jan T
@moreApi
im setting the world matrix of the volume directly if that might be an issue
same for bufferd or rai