I have loaded CT dicom images. I want to segment the tissue within the CT. E.g. I want to determine there is 30% soft tissue 45% bone tissue, 20% air etc ... based on hounsefield units.
Anyone an expert in biomedical image analysis with scikit image?
Any useful libraries?
Looking for help. Thanks ☺️
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I used nibabel to load it fine but it’s a 3D and I threshold it using threshold_otsu
The error I’m getting is “Nifti1Image’ object has no attribute min
Nifti1Imageobject. There is probably a function you can call on it that will give you a numpy array? Sorry, I don’t know that library.
nibabelwhich looks pretty tailored to your needs?
get_fdatawas added in version 2.2? Are you using an older version? If so, try upgrading.