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Repo info
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E | M
@ewuramaminka
ok i just tried
i still got this 'AttributeError: 'Nifti1Image' object has no attribute 'get_fdata'
Curtis Rueden
@ctrueden
Which version of nibabel?
We can check the source code.
From the changelog: it looks like the get_fdata was added in version 2.2? Are you using an older version? If so, try upgrading.
Gotta run to a meeting. Good luck.
E | M
@ewuramaminka
2.0.2
nibabel ver - 2.0.2
Curtis Rueden
@ctrueden
See if you can update to 2.2 or newer.
E | M
@ewuramaminka
I finally got stik to load it
Thanks very much
Dr .Muhammad Anjum Iqbal
@DrMuhammadAnju1_twitter
Hi i DO NOT KNOW , it is proper platform about my problem ! but if any body knows . please let me know . my question is "to get R in python for window "
Mark Harfouche
@hmaarrfk
Mixing languages is hard.

Hi everyone; we're going to try something new for the chat forum. Please direct your browsers to:

https://skimage.zulipchat.com

(or download the app)

We'll try this forum for a few weeks to see how it goes!

E | M
@ewuramaminka

I have dicom files to auto segment using atlas and CNN approach. I’m looking to measure correspondence between these automatic contours and manual contours created by experts. Kindly advise what techniques are best

-Hausdoff distance
-structural similarity index (SSIM)
-Bidirectional local distance measurement (BLD)
-Mean square errors (MSE)
-Dice similarity coefficient
-Distance transforms

Please advise if there are any I haven’t listed and which ones are best for the operation I want to carry out.

Vishesh Mangla
@XtremeGood
someone here?
E | M
@ewuramaminka
im wondering.. nobody replied to my question
Josh Moore
@joshmoore
Perhaps try on https://forum.image.sc ?
Kira Evans
@kne42
the scikit-image devs have switched to using zulip and no longer monitor this channel
tonyVeco
@tonyVeco
Hi everyone!!
Mark Harfouche
@hmaarrfk

Hi everyone; we're going to try something new for the chat forum. Please direct your browsers to:

https://skimage.zulipchat.com

(or download the app)

We'll try this forum for a few weeks to see how it goes!

tonyVeco
@tonyVeco
ok, so I could submit my question there ;)
Andrew Schaub
@drewschaub
Http://scikit-image.org/docs/0.7.0/api/skimage.feature.peak.htm goes to wrong url if banner is clicked, scikits-image.org. I know its an older version, but i also noticed the banner is edited to say scikits-image and not scikit
Mark Harfouche
@hmaarrfk
Hi Andrew, Thanks can you please raise an issue on the repo?
Not to ignore your message, but I want this zulip chat message to be the first one people see
Hi everyone; we're going to try something new for the chat forum. Please direct your browsers to:
https://skimage.zulipchat.com
(or download the app)
We'll try this forum for a few weeks to see how it goes!
Andrew Schaub
@drewschaub
will do! Ill switch to the other chatroom as well.
Mark Harfouche
@hmaarrfk
Hi everyone; we're going to try something new for the chat forum. Please direct your browsers to:
https://skimage.zulipchat.com
(or download the app)
We'll try this forum for a few weeks to see how it goes!
Andrew Chalmers
@chalmersgit
Looking at the SSIM metric, does anyone know much about its parameters? Specifically, I've seen that the default window size = 11 is recommended. But to me, this seems like this variable should be dependent on the resolution of the image. Anyone have any thoughts on this?
Andrew Chalmers
@chalmersgit
Just looking at the original ssim paper, they use ~768x512 resolution images. My intuition is to use this as a way of scaling the window size. That is, using the target resolution against the 768x512 as a ratio to scale the window size lower or higher resolution images appropriately.
Andrew Chalmers
@chalmersgit
Oh i see that you are trying to use zulipchat, ill check it out