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Berchie Agyemang Nti
@Berchie
Thank you @ramonski
Debindra
@debindra
Hi all,
I'm using senaite 2.x and trying to implement a referral module, any solution??
Thanks in advance.
疯狂的卡门
@crazy_babaq_twitter
in the docker ,how to change the toolbar logo in Senaite 2.3?
Ramon Bartl
@ramonski
@crazy_babaq_twitter: You can go to http://<your-senaite-site>/setup to change the logo
Jeff Bullard
@Jeff-DFWEnv
I'm programming a template in Senaite.Impress to get QC section for Reference Analyses to show up on teh report. In model.py I have the reference analyses objects (for example <ReferenceAnalysis at SA-100>). But I can't figure out how to get the Expected Value, Min and Max from there.
vars() on the Reference Analysis object gives me this, but no min, max and expected value:
Jeff Bullard
@Jeff-DFWEnv

{'Category': u'da1107d98a0e455da8648cb92c33aabf', 'ReferenceAnalysesGroupID': u'QC-007-001', 'LowerDetectionLimitSoil': u'2.5', 'Uncertainties': [], '_signature': '\xa1\x83\xcb\x0c\x01\xc0\t\xfd\xd1V\xf8\xab\xfdYP\x06', 'SortKey': None, 'marshall_hook': None, 'RetractedAnalysesPdfReport': <plone.app.blob.field.BlobWrapper object at 0x7f7b485497d0>, 'Attachment': [], 'Department': u'371de92094ac41e1b904c48b0f80647c', 'DuplicateVariation': (0, 0), '_senaite_core__Field__Edit_Analysis_Hidden_Permission': ('LabManager', 'Manager', 'LabClerk', 'Publisher'), '_at_creation_flag': False, 'title': u'Sulfate', 'demarshall_hook': None, 'ProtocolID': u'EPA 9038', 'id': 'SA-100', 'Precision': 1, '__provides__': <zope.interface.Provides object at 0x7f7b4854b610>, 'SurrogateRawSpike': (0, 0), 'DilutionFactor': (1, 0), 'FinalAmount': (250, 0), '_EtagSupport__etag': 'ts65281572.92', 'SurrogateLimitsSoil': u'', 'Analyst': u'', 'UpperDetectionLimit': (1000000000, 0), 'Keyword': u'sulfate', 'NumberOfRequiredVerifications': 1, '__annotations__': <BTrees.OOBTree.OOBTree object at 0x7f7b48549a50>, 'portal_type': 'ReferenceAnalysis', 'Multiplier': (10, 0), '_at_uid': '613faa816ef441eeac9d9a675ca19ac0', 'ResultAnalysisDate': None, 'at_references': <Folder at at_references>, '_Modify_portal_content_Permission': (), 'DetectionLimitOperand': u'', 'VAT': (0, 0), 'PrecisionFromUncertainty': False, 'AnalysisService': u'87e212b493264fc297fecfaf88752596', 'InterimFields': [], 'InitAmount': (25, 0), 'ScientificName': False, 'RawResult': (18, 66), 'Unit': u'mg/L', 'RawQuantLimit': (5, 0), 'RetestOf': u'', 'ShortTitle': u'', 'BulkPrice': (0, 0), 'ExponentialFormatPrecision': 7, 'creation_date': DateTime('2019/02/11 17:47:18.397642 US/Central'), 'Instrument': u'1c500ae80fae431d8186d033e710f3fc', 'StringResult': False, 'SurrogateLimitsWater': u'', 'AnalysisFlag': u'', 'Hidden': False, 'PointOfCapture': u'lab', 'UpperDetectionLimitSoil': (1000000000, 0), '_senaite_core__Edit_Results_Permission': (), 'ResultCaptureDate': DateTime('2022/10/09 02:07:36.419525 UTC'), 'MaxTimeAllowed': {'hours': '0', 'minutes': '0', 'days': '5'}, 'modification_date': DateTime('2022/09/19 12:58:28.465855 GMT-5'), 'RawDetectionLimit': (2, 5000000), 'workflow_history': {'bika_referenceanalysis_workflow': ({'action': None, 'review_state': 'assigned', 'actor': 'jeffb', 'comments': '', 'time': DateTime('2022/10/09 02:04:40.461077 UTC')}, {'action': 'submit', 'review_state': 'to_be_verified', 'actor': 'jeffb', 'comments': '', 'time': DateTime('2022/10/09 02:07:36.423109 UTC')}, {'action': 'verify', 'review_state': 'verified', 'actor': 'jeffb', 'comments': '', 'time': DateTime('2022/10/09 02:12:52.777264 UTC')})}, 'ResultOptions': [], 'Method': u'b67a778abde54d9dbd414a38f68af7d9', 'RawDetectionLimitSoil': (2, 5000000), 'Remarks': <BaseUnit at Remarks>, 'CommercialID': u'', '_senaite_core__Field__Edit_Analysis_Result_Permission': (), 'AllowManualDetectionLimit': False, 'AttachmentOption': u'p', 'ResultsRange': {}, 'Accredited': False, 'Surrogate': False, 'Uncertainty': None, '_senaite_core__View_Results_Permission': ('Analyst', 'LabClerk', 'LabManager', 'Manager', 'RegulatoryInspector'), 'Price': (35, 0), 'ReferenceType': u'c', 'LowerDetectionLimit': u'25', 'SoilUnit': u'ppm', 'InstrumentEntryOfResults': True, 'ManualEntryOfResults': True, 'DetectionLimitSelector': False, 'AdjustResult': u'True', '_senaite_core__Field__Edit_Analysis_Remarks_Permission': (), 'Result': u'187', '_md': {'effectiveDate': None, 'language': u'en', 'rights': <BaseUnit at rights>, 'subject': (), 'location': u'', 'expirationDate': None, 'contributors': (), 'allowDiscussion': None, 'creators': (u'admin',), 'description': <BaseUnit at description>}, '__ac_local_roles__': {'jeffb': ['Owner']}, 'AllowManualUncertainty': False, 'SelfVerification': -1}
疯狂的卡门
@crazy_babaq_twitter

hello,everyone!I install senaite on unbuntu18.04, refer to the documentation https://www.senaite.com/docs/installation .``` (base) senaite@senaite-OptiPlex-7060:~/senaitelims$ PYTHONHTTPSVERIFY=0
buildoutInstalling instance.
While:
Installing instance.

An internal error occurred due to a bug in either zc.buildout or in a
recipe being used:
Traceback (most recent call last):
File "/home/senaite/miniconda2/lib/python2.7/site-packages/zc/buildout/buildout.py", line 2174, in main
getattr(buildout, command)(args)
File "/home/senaite/miniconda2/lib/python2.7/site-packages/zc/buildout/buildout.py", line 817, in install
installed_files = self[part]._call(recipe.install)
File "/home/senaite/miniconda2/lib/python2.7/site-packages/zc/buildout/buildout.py", line 1603, in _call
return f()
File "/home/senaite/buildout-cache/eggs/plone.recipe.zope2instance-4.4.1-py2.7.egg/plone/recipe/zope2instance/init.py", line 169, in install
installed.extend(self.install_scripts())
File "/home/senaite/buildout-cache/eggs/plone.recipe.zope2instance-4.4.1-py2.7.egg/plone/recipe/zope2instance/init.py", line 668, in install_scripts
requirements, ws = self.egg.working_set(['plone.recipe.zope2instance'])
File "/home/senaite/buildout-cache/eggs/zc.recipe.egg-1.3.2-py2.7.egg/zc/recipe/egg/egg.py", line 101, in working_set
**kw)
File "/home/senaite/miniconda2/lib/python2.7/site-packages/zc/buildout/easy_install.py", line 957, in install
return installer.install(specs, working_set)
File "/home/senaite/miniconda2/lib/python2.7/site-packages/zc/buildout/easy_install.py", line 674, in install
for spec in specs]
File "/home/senaite/miniconda2/lib/python2.7/site-packages/pkg_resources/init.py", line 2995, in parse
req, = parse_requirements(s)
File "/home/senaite/miniconda2/lib/python2.7/site-packages/pkg_resources/init.py", line 2942, in parse_requirements
yield Requirement(line)
File "/home/senaite/miniconda2/lib/python2.7/site-packages/pkg_resources/init.py", line 2951, in init
raise RequirementParseError(str(e))
RequirementParseError: Invalid requirement, parse error at "'='"
```

Albion Shala
@albionshala
Hi everyone...
Is someone here who tried installing Senaite in the AWS EC2 instance?
Since I cannot find any documentation on how I can do that, I wanted to ask someone for help in this regard (where can I find such documentation)
Berchie Agyemang Nti
@Berchie

Getting error when importing the senaite setup load

Error Traceback (most recent call last): File "/home/senaite/senaitelims/src/senaite.core/src/senaite/core/browser/form/adapters/data_import.py", line 43, in handle_data_import LoadSetupData(self.context, self.request)() File "/home/senaite/senaitelims/src/senaite.core/src/senaite/core/exportimport/load_setup_data.py", line 119, in call adapter(self, workbook, self.dataset_project, self.dataset_name) File "/home/senaite/senaitelims/src/senaite.core/src/senaite/core/exportimport/setupdata/init.py", line 115, in call self.Import() File "/home/senaite/senaitelims/src/senaite.core/src/senaite/core/exportimport/setupdata/init.py", line 546, in Import raise Exception(message) Exception: Client %s has no Name

Can any help with this error? the clients' sheet has a Name column.
_

疯狂的卡门
@crazy_babaq_twitter
@ramonski Hello! I hope you can update the SENAITE installation tutorial on the official website.https://www.senaite.com/docs/installation
noblelabs1
@noblelabs1

@crazy_babaq_twitter Here is an UNOFFICIAL document I put together for everyone struggling to figure out how to install senaite for the first time with no knowledge of LINUX or cloud or anything. Hope it helps:

An Easy, Beginner's Guide, .Step-by-Step Senaite Cloud Install with Digital Ocean and Docker

Follow the Regular Senaite Documentation from there!
@albionshala See my previous post.
疯狂的卡门
@crazy_babaq_twitter
@noblelabs1 Thank you for your reply! Is there any document directly installed on Ubuntu 22.04?
noblelabs1
@noblelabs1
@crazy_babaq_twitter You can follow the docker compose instructions ti insall on ubuntu locally.
Or follow the cirrent documentation using python 2.7 environment
疯狂的卡门
@crazy_babaq_twitter
@noblelabs1 thanks
LimsIAEA
@LimsIAEA
Hi All,
How do you reload Senaite when developing?
Currently to implement changes I am restarting my Docker container. I would like to be able to hot reload to implement code changes. Failing that It would be great to reload Senaite via the browser, similar to the process described for plone.reload (https://github.com/plone/plone.reload).
Thank you.
dietervdwes
@dietervdwes
Hi All. I’m considering implementing Bika or Senaite in a clinical chemistry lab. Has anyone implemented Senaite / Bika in a working Clinical chemistry laboratory that can give me a demo of their setup? The workflow in Senaite / Bika is very much worksheet orientated, or single instance sample oriented, rather than patient orientated. With this I mean focus is placed on working with a batch of samples from 1 client, or working with a single sample belonging to 1 client.
As background to my question:
In clinical laboratories, the move towards automated random access analysers has shifted the focus to working with a single sample (belonging to a patient), rather than necessarily worksheets which has different patients on them. The sample is processed as a “worksheet” in itself as all analyses on that sample needs to be done as soon as possible. This can be done well in senaite with just omitting the assigning of a sample to a worksheet.
The samples for a single patient can be done by a range of different doctors (clients in Senaite’s case). The results of the patient should be grouped, and not necessarily only grouped in the “Clients” view tab – as patients move from clinicians quite often. Can this results view be setup somehow, either on a Senaite.listing interface or on the COA via senaite.impress? One needs to be able to see the “Patient’s” previous result on the COA.
Any help in this regard will be highly appreciated.
1 reply
Ghost
@ghost~636011426da03739849eb3e5
Screenshot 2022-10-31 at 11.18.44 AM.png
疯狂的卡门
@crazy_babaq_twitter
(base) senaite@senaite-OptiPlex-7060:~/Plone-5.2.9-UnifiedInstaller$ ./install.sh standalone --target=/home/senaite --instance=senaitelims --password=admin --with-python=/home/senaite/miniconda2/envs/senaite/bin/python2.7

Testing /home/senaite/miniconda2/envs/senaite/bin/python2.7 for Zope/Plone requirements....
/home/senaite/miniconda2/envs/senaite/bin/python2.7 looks OK. We will use it.

Rootless install method chosen. Will install for use by system user senaite

Detailed installation log being written to /home/senaite/Plone-5.2.9-UnifiedInstaller/install.log
Installing Plone 5.2.9 at /home/senaite

Creating Python virtual environment.
New python executable in /home/senaite/senaitelims/bin/python2.7
Also creating executable in /home/senaite/senaitelims/bin/python
Installing setuptools, pip, wheel...
done.
Installing Python requirements in virtual environment.
Unable to install Python requirements in virtual environment.

Installation has failed.
See the detailed installation log at /home/senaite/Plone-5.2.9-UnifiedInstaller/install.log
to determine the cause.
What's wrong?
疯狂的卡门
@crazy_babaq_twitter
install.log is
Creating Python virtual environment.
Virtualenv successfully created
Installing Python requirements in virtual environment.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', error(0, 'Error'))': /release/5.2.9/requirements.txt
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', error(0, 'Error'))': /release/5.2.9/requirements.txt
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', error(0, 'Error'))': /release/5.2.9/requirements.txt
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', error(0, 'Error'))': /release/5.2.9/requirements.txt
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', error(0, 'Error'))': /release/5.2.9/requirements.txt
ERROR: Could not install packages due to an EnvironmentError: HTTPSConnectionPool(host='dist.plone.org', port=443): Max retries exceeded with url: /release/5.2.9/requirements.txt (Caused by ProxyError('Cannot connect to proxy.', error(0, 'Error')))

Unable to install Python requirements in virtual environment.
Ronald Munjoma
@ronna
Hi @crazy_babaq_twitter please check your internet connection. Are you behind a proxy ? Caused by ProxyError('Cannot connect to proxy.', error(0, 'Error')))
Vishal Singh
@vishalMCE
1.jpeg
Is it possible to add BikaListingView in the Edit Client preferences options
2.jpeg
raskimono
@raskimono

Greetings to all. I'd like to add the analyst signature to the published report. i tried the following and it isn't working. any pointers are well appreciated on moving this forward. thanks again.

<tal:analysts repeat="analyst python:model.getAnalysts()">
<td style="border:none">
<div>
<img tal:condition="analysts/Signature|nothing" tal:attributes="src string:${analysts/absolute_url}/Signature" style="height:35px"/>
</div>
<div class="font-weight-bold">
<span tal:content="analysts/Salutation|nothing"></span>
<span tal:condition="analysts/Salutation|nothing"> </span>
<span tal:content="analysts/Fullname|nothing"></span>
</div>
<div>
<span tal:content="analysts/JobTitle|nothing"></span>
</div>
<div>
<span tal:content="analysts/DefaultDepartment/title|nothing"></span>
</div>
</td>
</tal:analysts>

Stefan Gruber
@grulisco
My blind guess: Try calling the fields in singular form analyst/[fieldname] instead of plural analysts/[fieldname]..
7 replies
𝕥𝕚𝕞
@iamwangwe_twitter
Hi guys, I am still a noob using working with Senaite. Is there a function that can get user info(SuperModel instance) using just their username? Any pointers would help ;)
eyahlin
@eyahlin

Is there a way to prevent the duplication of Batch objects into the same UID when they are created?

In our laboratory's case, a Batch is created for every request. A request would sometimes contain more than one sample. The certificate to publish would always contain all of the samples in the request. This is the reason why a new batch is always created per request.

No errors are reported while the Batch is created, and the analyses are performed, submitted and verified. However, when the users try to publish a certificate, this error sometimes appears:

https://i.imgur.com/5sznezE.png

It happens about once a month, as reported by the users. Is there a way to prevent it from happening?

Johan Fick
@johanfick:matrix.org
[m]
I am new to Senaite LIMS. I was wondering, is it possible to add attachments to e.g. the Clients profile (additional documentation of the client)?
Lunga
@Lunga001

Hello everyone,

It seems that for a while now there is no history awareness / versioning on ASs? So once an AS keyword has been used, it cannot be edited, https://mysite.com/bika_setup/bika_analysisservices/analysisservice-12, and a message, ‘Keyword is used in active analyses and can not be changed anymore’ is displayed
I have a case now where an instrument will be used to capture some results which were done manually before with arbitrary keyword , e.g. ControllerConductivity. In the instrument’s import file conductivity_from_controller is used and i want to edit the AS Keyword to match
Would that be possible at all under any circumstances? Say once all the Sample using the analysis are cancelled or published.
Only way out seems that i have to deactivate these and create new ASs with the correct keywords ( but then all of Profiles, Calculations, Reference Definitions, Specifications and Worksheet Templates are affected and the AS have to be replaced there too

Stefan Gruber
@grulisco
Hello @Lunga001 I also wondered about the AS keyword being not editable any longer. Since 2.x? I don't know exactly. IIRC it was editable earlier and IMHO it should be editable again. I suppose it wasn't a real problem, was it?
Ramon Bartl
@ramonski
@Lunga001, @grulisco: The active analyses have to be just cancelled, then it is possible again to edit the keyword
Stefan Gruber
@grulisco
@ramonski charming...
𝕥𝕚𝕞
@iamwangwe_twitter
Hi guys, check out this week's blog: https://senaite.hashnode.dev/setting-up-digital-ocean-for-senaite-installation
I would love to add any of you to the hashnode team publication in case you is interested in contributing to the community through blog articles.
𝕥𝕚𝕞
@iamwangwe_twitter
Hello, would you guys be interested in joining a webinar hosted by a volunteer in the community on the process of creating an egg and integrating it with Senaite? Also, is there anyone who would like volunteer to lead the session?
1 reply
Ronald Munjoma
@ronna
Hi @iamwangwe_twitter by egg are you referring to a Senaite add on?
1 reply
Abdelmonem Abuelezz (HawkMedia)
@abuelezz:matrix.org
[m]
Assalmo Alykum
Can I use Senaite for managing MultiLabs org
asalhamid
@asalhamid:matrix.org
[m]
Hi all, i have some questions regarding some specifications of SENATE LIMS, is there someone who could assist me?
Ronald Munjoma
@ronna
Hi @asalhamid:matrix.org please go ahead and ask your questions. Community members will do their best to answer you.
Hi @abuelezz:matrix.org

Can I use Senaite for managing MultiLabs org

Do you mean as a hosted service for different labs or the same lab with different locations? Please provide a clear use case

Lunga
@Lunga001

Humble greetings and happy new year everyone,

I would like to ask if this is a bug or not. We had an IDServer for a worksheet set like this WS{year}-{seq} and on the new year it did not reset the sequence and continued like this WS22-007, WS22-008, WS23-009 instead of WS23-001, the WS23-009 should be WS23-001?

Ramon Bartl
@ramonski
@Lunga: What is the split length for your key?
And happy new year to you and everyone else as well :confetti_ball:
Lunga
@Lunga001
Hi @ramonski sorry for the late reply it is 1