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    Cristóbal Gallardo
    @gallardoalba
    Hi @serapto, could you provide more details about your problem? Have you an account in Galaxy?
    Serap Tutgun Onrat
    @serapto
    Yes, I have got an galaxy account, I have fast and fast5 file for my project result. I want to find variations but I can not use galaxy programme
    Cristóbal Gallardo
    @gallardoalba
    Which kind of organism are your reads from? I recommend you to have a look at the available tutorials which use nanopore, perhaps it can help you https://training.galaxyproject.org/training-material/search?query=nanopore Otherwise let me know.
    Serap Tutgun Onrat
    @serapto
    I read Human, thank you very much
    Cristóbal Gallardo
    @gallardoalba
    Also have a look at this set of tutorials, as they fit with the purpose of your analysis https://training.galaxyproject.org/training-material/topics/variant-analysis/
    Serap Tutgun Onrat
    @serapto
    Thank you for your helps
    Pablo Moreno
    @pcm32
    Hi EU admins! Does the CI installing tools in https://github.com/usegalaxy-eu/usegalaxy-eu-tools at the usegalaxy.eu run on Sat AM or Sunday AM? I’m missing a tool that I had ready on the toolshed on Sat night, but maybe I got the wrong day for the CI?
    1 reply
    bgruening
    @bgruening:matrix.org
    [m]
    What tool is that? I can trigger an update ... Manually if it's urgent. But limited connectivity at the moment. Please drop me a mail if it's urgent.
    Steffen Neumann
    @sneumann
    Hi, I am super-excited about the monster-cool data upload widget Galaxy has. Which person(s) are the main coders (or do you call that sub-system maintainers ?) for data upload, including its UI ?
    bgruening
    @bgruening:matrix.org
    [m]
    There are several people that have touched that code. The UX-working group is in charge of it and specifically Aysam Guerler has done a large part of it.
    (I assume you don't mean the rule-based uploader)
    Steffen Neumann
    @sneumann
    Great Björn, exactly what I wanted to hear.
    bgruening
    @bgruening:matrix.org
    [m]
    Milad Miladi
    @mmiladi

    Hello, a user has sent me this message, is/was there any issue with the server now/recently?

    I am unable to access GraphClust from Galaxy apparently based on some cluster issues from the error written on the platform. May I know when this problem will be fixed?

    Björn Grüning
    @bgruening
    We had a scheduled maintenance last week, but people could still queue up tools.
    Not sure if the user refers to that
    otherwise everything is normal
    wm75 (Wolfgang Maier)
    @wm75:matrix.org
    [m]
    Maybe just a transient issue for a specific job? Could be fixed by rerunning the job then.
    Milad Miladi
    @mmiladi
    Thanks
    NuriaDiaz
    @NuriaDiaz
    Hi, I'm having issues with DESeq2, re-ran the job a couple of times and same issue. I've already send a report :)
    Gianmauro Cuccuru
    @gmauro
    Hi @NuriaDiaz, check the email
    Milad Miladi
    @mmiladi
    image.png
    The user cannot upload the data to the server (above screenshot)
    bgruening
    @bgruening:matrix.org
    [m]
    The screenshot is not showing much. Does the user see an error?
    Milad Miladi
    @mmiladi
    This is what I have: It even don't let me to upload any file or start any job
    It seems that the interface is frozen..
    Björn Grüning
    @bgruening
    restart Firefox?
    Milad Miladi
    @mmiladi
    What's that error message on top? not relevant, right?
    Björn Grüning
    @bgruening
    no, not relevant
    wm75 (Wolfgang Maier)
    @wm75:matrix.org
    [m]
    Galaxy web interface struggling with occasional 503 errors?
    Yvan Le Bras
    @yvanlebras
    yes the same
    Björn Grüning
    @bgruening
    better?
    wm75 (Wolfgang Maier)
    @wm75:matrix.org
    [m]
    Not really :(
    Yvan Le Bras
    @yvanlebras
    better for me
    since ~5 minutes
    Dodinh2410
    @Dodinh2410
    I can't moving data from Eu to other servers because of 20/04/2021 error.
    Melanie C. Föll
    @foellmelanie
    The uniprot retrieve data tool (https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/uniprot_rest_interface/uniprot/0.2) does not crash but becomes green with some strange html type information instead of a fasta file. The function was updated 2 days ago by uniprot, maybe that's related... I am not sure where to put this error report on github, thus here ;)
    Gianmauro Cuccuru
    @gmauro
    The service is temporarily unavailable. Please try again later.
    I think that's the reason
    Try again later
    Gianmauro Cuccuru
    @gmauro
    @foellmelanie I tried right now and it is working.
    M Bernt
    @bernt-matthias
    @gmauro @foellmelanie can you open an issue at Bjoern's tool repo? I think it would be good if the tool would catch this error. Maybe you can deposit the file somewhere and link it in the repo.
    Gianmauro Cuccuru
    @gmauro
    M Bernt
    @bernt-matthias
    I added a commit to my uniprot PR that is still open that hopefully catches this case bgruening/galaxytools#1092
    Björn Grüning
    @bgruening
    great, can you merge with master please
    Why have we not merged it?
    :)
    Melanie C. Föll
    @foellmelanie
    thank you all! :)
    M Bernt
    @bernt-matthias
    @bgruening all this recent reformatting (bgruening/galaxytools#1107) makes my life harder .. I will just ignore it ...
    Simon Bray
    @simonbray:matrix.org
    [m]
    @bernt-matthias: that does not matter, the main thing is that the new PR is passing linting