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    Milad Miladi
    @mmiladi
    Now succeed. Sorry so ignore previous one.
    This one is still valid though: galaxyproject/tools-iuc#2105
    fastq-dump filters out all reads
    Having fastq-dump --table SEQUENCE would fix the filtering.
    Björn Grüning
    @bgruening
    Will try to add the --table option as soon as I can
    Milad Miladi
    @mmiladi
    Merc :+1:
    David Twesigomwe
    @twesigomwedavid
    Hello, Are there any standard databases integrated for kraken on https://usegalaxy.eu/?
    Björn Grüning
    @bgruening
    @twesigomwedavid we don't
    which one do you need?
    David Twesigomwe
    @twesigomwedavid
    @bgruening I would like to use the one for bacteria
    amitpande74
    @amitpande74
    Hi...I want tools to be added on qiime
    Björn Grüning
    @bgruening
    @amitpande74 you mean complete new tools?
    @twesigomwedavid working on this. Please check in a few days
    amitpande74
    @amitpande74
    qiime quality-filter q-score (version 2018.4)
    this tool is not installed
    its here
    - Quality filter based on sequence quality scores
    Björn Grüning
    @bgruening
    and we probably need to update them
    can you create an issue
    that you want to have version 2.0
    amitpande74
    @amitpande74
    ok
    done
    David Twesigomwe
    @twesigomwedavid
    @bgruening Thank you
    Milad Miladi
    @mmiladi
    Hello, do you have an expectation when extra high-memory nodes will be available for the server?
    Helena Rasche
    @erasche
    at least a week to get more nodes into the cloud
    which jobs/tools?
    Milad Miladi
    @mmiladi
    I have a couple of Spades and Unicycler mapping waiting jobs
    Helena Rasche
    @erasche
    we can redirect to SGE in the meantime
    by redirect I mean you'll need to restart the jobs
    Milad Miladi
    @mmiladi
    That would be nice. Alternatively it should be fine to reduce the requested memory. It's Bacteria genome, so 180GB would be likely not needed.
    Krzysztof Poterlowicz
    @kpoterlowicz
    Hi Helena, just to confirm are you restarting handlers now on usegalaxy.eu ?
    Helena Rasche
    @erasche
    Hi @kpoterlowicz nope, we aren't doing anything.
    any reason?
    Krzysztof Poterlowicz
    @kpoterlowicz
    just two of my students have waiting status for while :)
    but other got yellow now so we will be patient
    Helena Rasche
    @erasche
    which tool are they running?
    Krzysztof Poterlowicz
    @kpoterlowicz
    group on the data
    they do simple 'from peaks to genes'
    tutorial
    Helena Rasche
    @erasche
    I don't see any jobs from them
    odd
    oh, ok
    one is in new
    yeah, they're in new
    this just takes some time for galaxy to get around to processing them unfortunately
    nothing we can do on our end
    Krzysztof Poterlowicz
    @kpoterlowicz
    thank you
    for checking