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    Melanie C. Föll
    @foellmelanie
    Dear Galaxy Team, thanks for the great TIAS service :) I was missing a comment section in the TIAS form, would be great if you could add one.
    Helena Rasche
    @erasche
    Sure, can do @foellmelanie! Happy to offer TIaaS
    I'll process your request today
    Melanie C. Föll
    @foellmelanie
    cool, thanks a lot :)
    Patrick Bovio
    @pbovio
    Is this going to happen at any point of time? OpenID authentication is not enabled in this instance of Galaxy
    I would like to use GenomeSpace with Galaxy :)
    Helena Rasche
    @erasche
    We've had some requests, we'll look into it as time permits, but I cannot say currently. Sorry @pbovio
    Patrick Bovio
    @pbovio
    @erasche ok, thank you for your answer. Let me know if one day it works ;)
    Lalli Enzo
    @EnzoLalli_twitter
    Hi, I have uploaded some files on your FTP site but they are not present in my FTP directory. My login is ninino@ipmc.cnrs.fr. Could you please help me to find my files? Many thanks, Enzo
    Helena Rasche
    @erasche
    Hi @EnzoLalli_twitter I'll have a look
    It looks like your FTP directory is indeed empty. Which FTP server URL did you use? galaxy.uni-freiburg.de or ftp.usegalaxy.eu ?
    Patrick Bovio
    @pbovio
    how do I handle 3 n cntrl and 2 n treated in bigwigs in something like DifBind? I want to look for differential regions in a ChIPseq
    or can i combine bigwigs?
    to only intersect 2n fused to 3n fused??
    Helena Rasche
    @erasche
    Hi @EnzoLalli_twitter I've received your emails, we'll respond to them shortly
    Thomas Wollmann
    @ThomasWollmann
    Is there a tool to perform a post/get request directly from galaxy? It would be awsome, if I can directly send my workflow results to a REST API based archive.
    Björn Grüning
    @bgruening
    You mean sending results to Zenodo etc?
    Thomas Wollmann
    @ThomasWollmann
    for example
    Björn Grüning
    @bgruening
    we have that on our todo list
    but no progress so far :(
    Thomas Wollmann
    @ThomasWollmann
    hmm this should be relatively easy. just a simple curl if you dont care about ddos protection.
    Björn Grüning
    @bgruening
    the complicated part is the authentification I guess
    Helena Rasche
    @erasche
    I'm currently not super keen on the idea of "anyone can make a request as if it comes from usegalaxy.eu"
    Thomas Wollmann
    @ThomasWollmann
    you can pass the login data into the url?
    Helena Rasche
    @erasche
    surely the better UX would also be targeted tools that do specific uploads to specific services
    Thomas Wollmann
    @ThomasWollmann
    would also be happy if have this feature just on my private server
    Björn Grüning
    @bgruening
    ideally this would work with OpenID connect, imho
    @ThomasWollmann but even to your private server you need to pass in credentials, correct?
    Thomas Wollmann
    @ThomasWollmann
    yes
    just a few rest apis support openid
    Björn Grüning
    @bgruening
    @ThomasWollmann how is authentification handled at orthanc?
    This tool does upload of data with OpenID https://usegalaxy.eu/?tool_id=genomespace_exporter&version=0.0.6
    (not working at the moment, as we do not have OpenID support yet, but such a tool exists, if you need a template)
    Thomas Wollmann
    @ThomasWollmann
    if uses HTTP Basic Auth
    Ghost
    @ghost~5772e7e2c2f0db084a206e1b
    Just a heads up, dragging files into the upload box doesn't work on .eu
    Ghost
    @ghost~5772e7e2c2f0db084a206e1b
    also the upload of .xlslx doesn't work, as reported by @yvanlebras , this seems to be a specific problem of .eu -- maybe the datatype_conf.xml.sample file hasn't been updated ?
    for reference this was fixed in galaxyproject/galaxy#6867
    Helena Rasche
    @erasche
    uh
    re 6867, yes, we are not on 18.09 yet, so of course we don't have that patch yet.
    Thanks for the heads up @mvdbeek, but @yvanlebras should retry on wednesday after we've updated :)
    Schulz_Lab
    @EddaSchulz
    Hi, I cannot find the Mageck Tools any more. I would to redo some analyses. Thanks for your help.
    marbrunet
    @marbrunet
    Hi, it seems that all (most of) the proteomics tools cannot be found anymore. Was this planned? And how long before they're back? Thanks :)
    Björn Grüning
    @bgruening
    On it .. sorry
    Not planned, thats for sure :)
    marbrunet
    @marbrunet
    Thanks a lot :)
    Helena Rasche
    @erasche
    Hi @marbrunet we've fixed the issue. Sorry for the inconvenience!
    Patrick Bovio
    @pbovio
    I need a sudgestion how and at what stage I can normalise the readcounts (sequencing depth) of different "n" in ChIP-seq
    better on the .BAM or at the .bigwig level?
    Björn Grüning
    @bgruening
    if BAM -> bigwig is a straight conversion this should not matter