@bgruening:matrix.org any update on my bug report for Trinity?
Yvan Le Bras
Hi @LadushkaY_twitter . I see you encounter issues with RNAseq analysis. You mentionned 4 weeks of running jobs? Seems to be quite big... Do you think this is "normal" (ie, you have big input files ?) or maybe not and maybe "just" trying rerunning the jobs can be ok ? If you have big files, maybe it can be of interest to look at reducing it but not sure this is relevant / possible
You want to have reads in FASTA format? I don't think they store it that way. But you can convert fastq to fasta.
I tired to convert from Fastq to Fasta. however, the result is not matching with Mirdeep ( I'm trying to follow galaxy tutorial for miRNA analysis). SRA does provide an option to directly download in Fasta, but I can't find an option here, unfortunately.
@bgruening:matrix.org Hi Björn, I get an "Internal Server Error" when trying to export a history into a workflow. Any insides? I would like to export all tools and settings to the workflow to publish it alongside a Revised Manuscript.