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The error message looks like a) wrong or unexpected inputs, b) no search results and a later step fails because there are no results to process
@ZhouHY-77: thanks for the report. It really looks like that the BLAST step in the Staramr tool is not yielding any result. The tool should yield a better error, but thtat is nothing we can fix.
I don't know what buttons you .eu admins pushed by usegalaxy.eu is performing a whole lot better today. no errors, really snappy execution speed.
Thats nice to hear :)
Jobs in gray might be normal depending on how many users are running jobs currently. However in your case I think transfs is a GPU tool, so here it will take even longer ... we do not have that many GPUs
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bgruening - I need to share a history with you - this is the one where when I select multiple datasets it does not give me the option to build a collection. Please DM me the correct email to share with.
btw I tried to get an "overview" of this history using parsec but
parsec -g usegalaxyeu datasets get_datasets --history_id 46051bf8534e30b9 gives me an empty list
Hi all! Would it be possible to run the interproscan data manager on usegalaxy.eu? the database is missing for latest version 5.55-88.0
not sure I can do this tm, but I will try
Hello
I used Import Annadata and loom to process my single cell data
My genes file included 28 thousand gene symbols and ensemble IDs
Now, although the output of this tool is green, the number of genes is considered zero
And in the matrix he created, my genes are not there
what is the reason?
I used Import Annadata and loom to process my single cell data
My genes file included 28 thousand gene symbols and ensemble IDs
Now, although the output of this tool is green, the number of genes is considered zero
And in the matrix he created, my genes are not there
what is the reason?
1 reply
@amini1573: this is hard to say from your description. Did you follow any tutorial?
Did you mapped against the correct reference genome?
What was your mapping statistic?
I see something: https://usegalaxy.eu/apollo/1399918/jbrowse/index.html
yeah some things are showing, but the right panel ui doesn't load for me, usually it means there's out of memory errors or things like that
do you have access to the logs?
and there are only 4 people in your training group registered
maybe the persons have not clicked the TIaaS link?
One BWA job from one person in your TIaaS group is still waiting for one input dataset to be finished
we have 100 of Phich Its running
hi
if I wanna compare miR expression in cancer tissue vs normal its better to analysis miseq or rna-seq?
if I wanna compare miR expression in cancer tissue vs normal its better to analysis miseq or rna-seq?