Where communities thrive


  • Join over 1.5M+ people
  • Join over 100K+ communities
  • Free without limits
  • Create your own community
People
Repo info
Activity
  • Jan 31 2019 22:06
    blavoie starred zenodo/zenodo
  • Jan 31 2019 20:43
    dybedal commented #1583
  • Jan 31 2019 15:35
    slint review_requested #1690
  • Jan 31 2019 15:31
    slint labeled #1599
  • Jan 31 2019 15:31
    slint labeled #1599
  • Jan 31 2019 15:31
    slint labeled #1599
  • Jan 31 2019 15:31
    slint commented #1599
  • Jan 31 2019 15:29
    ChiaraBi synchronize #1652
  • Jan 31 2019 13:37
    slint unassigned #617
  • Jan 31 2019 13:37
    slint unassigned #1639
  • Jan 31 2019 12:59
    ChiaraBi synchronize #1652
  • Jan 31 2019 11:09
    ChiaraBi assigned #1646
  • Jan 31 2019 10:49
    ChiaraBi synchronize #1692
  • Jan 31 2019 10:44
    ChiaraBi assigned #1657
  • Jan 31 2019 10:43
    ChiaraBi synchronize #1692
  • Jan 31 2019 10:31
    ChiaraBi opened #1692
  • Jan 31 2019 08:40
    kpalin commented #1599
  • Jan 30 2019 18:10
    ChiaraBi synchronize #1652
  • Jan 30 2019 17:26
    ChiaraBi synchronize #1652
  • Jan 30 2019 10:45
    gwarf starred zenodo/zenodo
Alex Ioannidis
@slint
which completely removes the sign-up feature
if you want to just remove the button, you have to override the header_login via the THEME_HEADER_LOGIN_TEMPLATE variable
Feysal Mama
@feysalmam_gitlab
ok thank you @slint, 100% succeeded the target.
yonatan
@yonatanmekuriaw
Hello, i have two separately installed zenodo repositories and i want each repository community harvest another one, so how can i configure to harvest metadata and contents between two zenodo repository communities via OAI-PMH?
Lars Holm Nielsen
@lnielsen
There’s no support for harvesting in Zenodo……Zenodo (the service) on purpose do not want to harvest anything, because it opens a lot of problems related to deduplication etc
You can try installing https://github.com/inveniosoftware/invenio-oaiharvester but I’m not sure if anyone is actually using the module, or if it works…..
Kai Woerner
@Herrner
where do zenodos citation formats come from?
Lars Holm Nielsen
@lnielsen
It’s from Citation Style Langugae……you generate a CSL json and then apply a style on it to format a text string
Kai Woerner
@Herrner
Thanks!
Stefan Appelhoff
@sappelhoff
Hi! Is there a documentation page on how to use .zenodo.json files when using Zenodo with GitHub?
Thomas Morrell
@tmorrell
Lordjette Leigh Lecaros
@lordjette

Hello, I just finished publishing Journal (pdf) and Presentation doc in with meta data in my local. But how how can I expose this in frontend to search a result? I tried to run:

zenodo index run

Kindly help, thanks. Please see image
https://ibb.co/t2ZyjKf
https://ibb.co/5T174NT

Lars Holm Nielsen
@lnielsen
only things accepted in the zenodo community appear on the frontpage
Lordjette Leigh Lecaros
@lordjette
hello @lnielsen , is this means only accepted/published can be seen in the frontpage? I have published a journal doc in zenodo community. but, it can't be seen in recent upload frontpage. see images:
https://ibb.co/9hbYQ2Z
https://ibb.co/t2ZyjKf
Lars Holm Nielsen
@lnielsen
yes, only the frontpage
search shows everything
Lordjette Leigh Lecaros
@lordjette
I have 3 published article in a community but still doesn't show in front https://ibb.co/5T174NT
Lars Holm Nielsen
@lnielsen
Lordjette Leigh Lecaros
@lordjette
@lnielsen thanks.
Kai Woerner
@Herrner
Deleting records and files through the api is only allowed for unpublished depositions (so say the docs) - is there any other way to delete published records and their files programatically (for an admin user)?
<context>we have a sandbox(staging machine that we would like to "clean up" from time to time - so no DOI harm done.</context>
Lordjette Leigh Lecaros
@lordjette
Hello, I have found there is no "stats":{} shows in page after published and accept record in a community. I tried to run celery along zenodo run - h 1.2.3.4
Lordjette Leigh Lecaros
@lordjette
I tried 3 different users to download and view record but it does not appear in page.
Graeme Winter
@graeme-winter
Hi Folks - talked to Lars last week - Graeme from Diamond Light Source who is working on a tool to allow folks to automatically upload COVID-19 related data sets - for small files works fine using the new stream-type API, but for larger files I am getting network errors sometimes - ``` File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20200323/conda_base/lib/python3.6/site-packages/requests/api.py", line 134, in put
return request('put', url, data=data, kwargs)
File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20200323/conda_base/lib/python3.6/site-packages/requests/api.py", line 61, in request
return session.request(method=method, url=url,
kwargs)
File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20200323/conda_base/lib/python3.6/site-packages/requests/sessions.py", line 530, in request
resp = self.send(prep, send_kwargs)
File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20200323/conda_base/lib/python3.6/site-packages/requests/sessions.py", line 643, in send
r = adapter.send(request,
kwargs)
File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20200323/conda_base/lib/python3.6/site-packages/requests/adapters.py", line 498, in send
raise ConnectionError(err, request=request)
requests.exceptions.ConnectionError: ('Connection aborted.', OSError("(32, 'EPIPE')",))
Lars Holm Nielsen
@lnielsen
Hi @graeme-winter
Does it happen immediately
?
or
Graeme Winter
@graeme-winter
No, after quite a while - makes me think a lot of the data has been uploaded
I acknowledge that this is quite a lot of data to HTTP PUT
Lars Holm Nielsen
@lnielsen
can you provide me with one of the following: user-agent string, bucket id and filename (e.g. file upload url) or ip address
then i can locate the requests in the webserer logs more easily
Graeme Winter
@graeme-winter
sure thing, will see what I can do
OK, so this was the upload which included a failed file https://zenodo.org/deposit/3724425
I think the file was "INS1_3.tar"
Lars Holm Nielsen
@lnielsen
Ok….tahnks…..
will check
Graeme Winter
@graeme-winter
I was running inside a screen session so the logging vanished off the top 🙄
I should add some actual logging to the application...
Lars Holm Nielsen
@lnielsen
Ok….I’ve found the failed request in the logs
Graeme Winter
@graeme-winter
Cool - there is a very good chance that the issue was on the interconnect or at my end... but adding some more resilience would be a good thing I think
Lars Holm Nielsen
@lnielsen
I can see it send a 502 bad gateway from our end
and that it managed to go to ~5GB uploaded first
does it fit that it was uploading for some 15-20 minutes before failing?
Graeme Winter
@graeme-winter
Yeh that fits
anything I can do at my end to be more resilient e.g. restart the upload at the failed point?
Lars Holm Nielsen
@lnielsen
unfortunately we don’t do resumable uploads :S
we’re looking into it and trying to debug it…..right now,it’s just to try again….which is not very nice for a 20 minute upload :(